Genome-wide analysis captures the determinants of the antibiotic cross-resistance interaction network

V Lázár, I Nagy, R Spohn, B Csörgő, Á Györkei… - Nature …, 2014 - nature.com
Understanding how evolution of antimicrobial resistance increases resistance to other drugs
is a challenge of profound importance. By combining experimental evolution and genome …

Mutational background influences P. aeruginosa ciprofloxacin resistance evolution but preserves collateral sensitivity robustness

S Hernando-Amado, P Laborda… - Proceedings of the …, 2022 - National Acad Sciences
Collateral sensitivity is an evolutionary trade-off whereby acquisition of the adaptive
phenotype of resistance to an antibiotic leads to the nonadaptive increased susceptibility to …

BACTOME—a reference database to explore the sequence- and gene expression-variation landscape of Pseudomonas aeruginosa clinical isolates

K Hornischer, A Khaledi, S Pohl… - Nucleic acids …, 2019 - academic.oup.com
Extensive use of next-generation sequencing (NGS) for pathogen profiling has the potential
to transform our understanding of how genomic plasticity contributes to phenotypic …

Identification of Pseudomonas aeruginosa genes associated with antibiotic susceptibility

L Chen, L Yang, XY Zhao, LX Shen… - Science China Life …, 2010 - Springer
Pseudomonas aeruginosa causes acute and chronic infections in humans and these
infections are difficult to treat due to the bacteria's high-level of intrinsic and acquired …

Using experimental evolution to identify druggable targets that could inhibit the evolution of antimicrobial resistance

HH Mehta, AG Prater, Y Shamoo - The Journal of antibiotics, 2018 - nature.com
With multi-drug and pan-drug-resistant bacteria becoming increasingly common in hospitals,
antibiotic resistance has threatened to return us to a pre-antibiotic era that would completely …

Environmental heterogeneity drives within-host diversification and evolution of Pseudomonas aeruginosa

T Markussen, RL Marvig, M Gómez-Lozano, K Aanæs… - MBio, 2014 - Am Soc Microbiol
Microbial population polymorphisms are commonly observed in natural environments,
including long-term infected hosts. However, the underlying processes promoting and …

Pseudomonas aeruginosa: An Audacious Pathogen with an Adaptable Arsenal of Virulence Factors

I Jurado-Martín, M Sainz-Mejías… - International journal of …, 2021 - mdpi.com
Pseudomonas aeruginosa is a dominant pathogen in people with cystic fibrosis (CF)
contributing to morbidity and mortality. Its tremendous ability to adapt greatly facilitates its …

Novel Conserved Genotypes Correspond to Antibiotic Resistance Phenotypes of E. coli Clinical Isolates

MC Swick, MA Evangelista, TJ Bodine… - PloS one, 2013 - journals.plos.org
Current efforts to understand antibiotic resistance on the whole genome scale tend to focus
on known genes even as high throughput sequencing strategies uncover novel …

A genome-wide atlas of antibiotic susceptibility targets and pathways to tolerance

D Leshchiner, F Rosconi, B Sundaresh… - Nature …, 2022 - nature.com
Detailed knowledge on how bacteria evade antibiotics and eventually develop resistance
could open avenues for novel therapeutics and diagnostics. It is thereby key to develop a …

Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools

L Freschi, C Bertelli, J Jeukens… - FEMS microbiology …, 2018 - academic.oup.com
Pseudomonas aeruginosa is an important opportunistic pathogen, especially in the context
of infections of cystic fibrosis (CF). In order to facilitate coordinated study of this pathogen, an …