[HTML][HTML] MicroSalmon: A Comprehensive, Searchable Resource of Predicted MicroRNA Targets and 3′ UTR Cis-Regulatory Elements in the Full-Length Sequenced …

S Ramberg, R Andreassen - Non-coding RNA, 2021 - mdpi.com
Complete 3′ UTRs unambiguously assigned to specific mRNA isoforms from the Atlantic
salmon full-length (FL) transcriptome were collected into a 3′ UTRome. miRNA response …

[HTML][HTML] Sequencing and Characterisation of an Extensive Atlantic Salmon (Salmo salar L.) MicroRNA Repertoire

M Bekaert, NR Lowe, SC Bishop, JE Bron, JB Taggart… - PLoS …, 2013 - journals.plos.org
Atlantic salmon (Salmo salar L.), a member of the family Salmonidae, is a totemic species of
ecological and cultural significance that is also economically important in terms of both …

MicroTrout: A comprehensive, genome-wide miRNA target prediction framework for rainbow trout, Oncorhynchus mykiss

JA Mennigen, D Zhang - Comparative Biochemistry and Physiology Part D …, 2016 - Elsevier
Rainbow trout represent an important teleost research model and aquaculture species. As
such, rainbow trout are employed in diverse areas of biological research, including basic …

[HTML][HTML] Expanding the miRNA repertoire in Atlantic salmon; discovery of IsomiRs and miRNAs highly expressed in different tissues and developmental stages

NT Woldemariam, O Agafonov, B Høyheim… - Cells, 2019 - mdpi.com
MicroRNAs (miRNAs) are important post-transcriptional gene expression regulators. Here,
448 different miRNA genes, including 17 novel miRNAs, encoding for 589 mature Atlantic …

A MicroRNA Repertoire for Functional Genome Research in Rainbow Trout (Oncorhynchus mykiss)

M Salem, C Xiao, J Womack, CE Rexroad, J Yao - Marine biotechnology, 2010 - Springer
MicroRNAs (miRNAs) are small, highly conserved, non-coding RNAs that regulate gene
expression of target mRNAs through cleavage or translational inhibition. miRNAs are most …

[HTML][HTML] Discovery and characterization of miRNA genes in atlantic salmon (Salmo salar) by use of a deep sequencing approach

R Andreassen, MM Worren, B Høyheim - BMC genomics, 2013 - Springer
Background MicroRNAs (miRNAs) are an abundant class of endogenous small RNA
molecules that downregulate gene expression at the posttranscriptional level. They play …

FishmiRNA: An evolutionarily supported microRNA annotation and expression database for ray-finned fishes

T Desvignes, P Bardou, J Montfort… - Molecular Biology …, 2022 - academic.oup.com
MicroRNAs (miRNAs) are important post-transcriptional regulators of gene expression
involved in countless biological processes and are widely studied across metazoans …

[HTML][HTML] Fishing into the MicroRNA transcriptome

ME Herkenhoff, AC Oliveira, PG Nachtigall… - Frontiers in …, 2018 - frontiersin.org
In the last decade, several studies have been focused on revealing the microRNA (miRNA)
repertoire and determining their functions in farm animals such as poultry, pigs, cattle, and …

Expanding the annotation of zebrafish microRNAs based on small RNA sequencing

T Desvignes, MJ Beam, P Batzel, J Sydes… - Gene, 2014 - Elsevier
MicroRNAs (miRs) are short non-coding RNAs that fine-tune the regulation of gene
expression to coordinate a wide range of biological processes. Because of their role in the …

[HTML][HTML] Expression Analysis in Atlantic Salmon Liver Reveals miRNAs Associated with Smoltification and Seawater Adaptation

A Shwe, A Krasnov, T Visnovska, S Ramberg… - Biology, 2022 - mdpi.com
Simple Summary Smoltification is a developmental process that preadapts Atlantic salmon
for a life in seawater. Suboptimal smoltification and poor timing of transfer to seawater is …