[HTML][HTML] SE-OnionNet: a convolution neural network for protein–ligand binding affinity prediction
S Wang, D Liu, M Ding, Z Du, Y Zhong, T Song… - Frontiers in …, 2021 - frontiersin.org
Deep learning methods, which can predict the binding affinity of a drug–target protein
interaction, reduce the time and cost of drug discovery. In this study, we propose a novel …
interaction, reduce the time and cost of drug discovery. In this study, we propose a novel …
[HTML][HTML] Binding affinity prediction for protein–ligand complex using deep attention mechanism based on intermolecular interactions
Background Accurate prediction of protein–ligand binding affinity is important for lowering
the overall cost of drug discovery in structure-based drug design. For accurate predictions …
the overall cost of drug discovery in structure-based drug design. For accurate predictions …
[HTML][HTML] AK-score: accurate protein-ligand binding affinity prediction using an ensemble of 3D-convolutional neural networks
Accurate prediction of the binding affinity of a protein-ligand complex is essential for efficient
and successful rational drug design. Therefore, many binding affinity prediction methods …
and successful rational drug design. Therefore, many binding affinity prediction methods …
CAPLA: improved prediction of protein–ligand binding affinity by a deep learning approach based on a cross-attention mechanism
Motivation Accurate and rapid prediction of protein–ligand binding affinity is a great
challenge currently encountered in drug discovery. Recent advances have manifested a …
challenge currently encountered in drug discovery. Recent advances have manifested a …
Onionnet: a multiple-layer intermolecular-contact-based convolutional neural network for protein–ligand binding affinity prediction
Computational drug discovery provides an efficient tool for helping large-scale lead
molecule screening. One of the major tasks of lead discovery is identifying molecules with …
molecule screening. One of the major tasks of lead discovery is identifying molecules with …
[HTML][HTML] A Cascade graph convolutional network for predicting protein–ligand binding affinity
Accurate prediction of binding affinity between protein and ligand is a very important step in
the field of drug discovery. Although there are many methods based on different …
the field of drug discovery. Although there are many methods based on different …
MGPLI: exploring multigranular representations for protein–ligand interaction prediction
Motivation The capability to predict the potential drug binding affinity against a protein target
has always been a fundamental challenge in silico drug discovery. The traditional …
has always been a fundamental challenge in silico drug discovery. The traditional …
[HTML][HTML] CSConv2d: a 2-D structural convolution neural network with a channel and spatial attention mechanism for protein-ligand binding affinity prediction
X Wang, D Liu, J Zhu, A Rodriguez-Paton, T Song - Biomolecules, 2021 - mdpi.com
The binding affinity of small molecules to receptor proteins is essential to drug discovery and
drug repositioning. Chemical methods are often time-consuming and costly, and models for …
drug repositioning. Chemical methods are often time-consuming and costly, and models for …
DLSSAffinity: protein–ligand binding affinity prediction via a deep learning model
H Wang, H Liu, S Ning, C Zeng, Y Zhao - Physical Chemistry Chemical …, 2022 - pubs.rsc.org
Evaluating the protein–ligand binding affinity is a substantial part of the computer-aided drug
discovery process. Most of the proposed computational methods predict protein–ligand …
discovery process. Most of the proposed computational methods predict protein–ligand …
Hac-net: A hybrid attention-based convolutional neural network for highly accurate protein–ligand binding affinity prediction
GW Kyro, RI Brent, VS Batista - Journal of Chemical Information …, 2023 - ACS Publications
Applying deep learning concepts from image detection and graph theory has greatly
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …