[HTML][HTML] A survey of best practices for RNA-seq data analysis
Abstract RNA-sequencing (RNA-seq) has a wide variety of applications, but no single
analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data …
analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data …
Advanced applications of RNA sequencing and challenges
Next-generation sequencing technologies have revolutionarily advanced sequence-based
research with the advantages of high-throughput, high-sensitivity, and high-speed. RNA-seq …
research with the advantages of high-throughput, high-sensitivity, and high-speed. RNA-seq …
RNA‐seq: Basic bioinformatics analysis
F Ji, RI Sadreyev - Current protocols in molecular biology, 2018 - Wiley Online Library
Quantitative analysis of gene expression is crucial for understanding the molecular
mechanisms underlying genome regulation. RNA‐seq is a powerful platform for …
mechanisms underlying genome regulation. RNA‐seq is a powerful platform for …
[HTML][HTML] RNA sequencing data: hitchhiker's guide to expression analysis
K Van den Berge, KM Hembach… - Annual Review of …, 2019 - annualreviews.org
Gene expression is the fundamental level at which the results of various genetic and
regulatory programs are observable. The measurement of transcriptome-wide gene …
regulatory programs are observable. The measurement of transcriptome-wide gene …
RNA sequencing and analysis
KR Kukurba, SB Montgomery - Cold Spring Harbor Protocols, 2015 - cshprotocols.cshlp.org
RNA sequencing (RNA-Seq) uses the capabilities of high-throughput sequencing methods
to provide insight into the transcriptome of a cell. Compared to previous Sanger sequencing …
to provide insight into the transcriptome of a cell. Compared to previous Sanger sequencing …
[HTML][HTML] Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis
Abstract RNA-sequencing (RNA-seq) is an essential technique for transcriptome studies,
hundreds of analysis tools have been developed since it was debuted. Although recent …
hundreds of analysis tools have been developed since it was debuted. Although recent …
RNA‐Seq methods for transcriptome analysis
R Hrdlickova, M Toloue, B Tian - Wiley Interdisciplinary …, 2017 - Wiley Online Library
Deep sequencing has been revolutionizing biology and medicine in recent years, providing
single base‐level precision for our understanding of nucleic acid sequences in high …
single base‐level precision for our understanding of nucleic acid sequences in high …
Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis
F Finotello, B Di Camillo - Briefings in functional genomics, 2015 - academic.oup.com
RNA-seq is a methodology for RNA profiling based on next-generation sequencing that
enables to measure and compare gene expression patterns at unprecedented resolution …
enables to measure and compare gene expression patterns at unprecedented resolution …
RNA‐seq data: challenges in and recommendations for experimental design and analysis
RNA‐seq is widely used to determine differential expression of genes or transcripts as well
as identify novel transcripts, identify allele‐specific expression, and precisely measure …
as identify novel transcripts, identify allele‐specific expression, and precisely measure …
[HTML][HTML] RNA-Seq workflow: gene-level exploratory analysis and differential expression
Here we walk through an end-to-end gene-level RNA-Seq differential expression workflow
using Bioconductor packages. We will start from the FASTQ files, show how these were …
using Bioconductor packages. We will start from the FASTQ files, show how these were …