An overview of genomics, phylogenomics and proteomics approaches in Ascomycota

L Muggia, CG Ametrano, K Sterflinger, D Tesei - Life, 2020 - mdpi.com
Fungi are among the most successful eukaryotes on Earth: they have evolved strategies to
survive in the most diverse environments and stressful conditions and have been selected …

OMICS and other advanced technologies in mycological applications

NN Wijayawardene, N Boonyuen, CB Ranaweera… - Journal of Fungi, 2023 - mdpi.com
Fungi play many roles in different ecosystems. The precise identification of fungi is important
in different aspects. Historically, they were identified based on morphological characteristics …

Bioinformatic approaches for fungal omics

G Xiao, X Zhang, Q Gao - BioMed Research International, 2017 - ncbi.nlm.nih.gov
Fungal omics (including genomics, transcriptomics, metabolomics, proteomics, and
lipidomics) are now broadly applied to help understand both the basic fungal biology and …

(Post-) genomics approaches in fungal research

MV Aguilar-Pontes, RP de Vries… - Briefings in functional …, 2014 - academic.oup.com
To date, hundreds of fungal genomes have been sequenced and many more are in
progress. This wealth of genomic information has provided new directions to study fungal …

Fungal taxonomy: current status and research agendas for the interdisciplinary and globalisation era

LW Zhou, TW May - Mycology, 2023 - Taylor & Francis
Fungal taxonomy is a fundamental discipline that aims to recognise all fungi and their
kinships. Approximately 5% of a practical estimate of 2.2–3.8 million species globally are …

Sequence-based classification and identification of Fungi

D Hibbett, K Abarenkov, U Kõljalg, M Öpik, B Chai… - Mycologia, 2016 - Taylor & Francis
Fungal taxonomy and ecology have been revolutionized by the application of molecular
methods and both have increasing connections to genomics and functional biology …

Post-genomic approaches to understanding interactions between fungi and their environment

RP De Vries, I Benoit, G Doehlemann, T Kobayashi… - IMA fungus, 2011 - Springer
Fungi inhabit every natural and anthropogenic environment on Earth. They have highly
varied life-styles including saprobes (using only dead biomass as a nutrient source) …

Fungal evolution meets fungal genomics

J Leigh, E Seif, N Rodriguez, Y Jacob… - Handbook of Fungal …, 2003 - books.google.com
In this contribution, we will review how much is currently known about fungal evolution, and
how well phylogenetic hypotheses are supported by the data that were used for these …

[HTML][HTML] Improving taxonomic delimitation of fungal species in the age of genomics and phenomics

A Stengel, KM Stanke, AC Quattrone… - Frontiers in …, 2022 - frontiersin.org
Species concepts have long provided a source of debate among biologists. These lively
debates have been important for reaching consensus on how to communicate across …

Fungal genomes and insights into the evolution of the kingdom

JE Stajich - Microbiology spectrum, 2017 - Am Soc Microbiol
The kingdom Fungi comprises species that inhabit nearly all ecosystems. Fungi exist as both
free-living and symbiotic unicellular and multicellular organisms with diverse morphologies …