Future perspectives and challenges of fungal systematics in the age of big data

Z Wang, RH Nilsson, TY James, Y Dai… - Biology of microfungi, 2016 - Springer
Mycological research, especially research on fungal evolution and ecology, requires a
robust and detailed fungal classification and phylogeny to facilitate efficient and informative …

Six key traits of fungi: their evolutionary origins and genetic bases

LG Nagy, R Tóth, E Kiss, J Slot, A Gácser… - Microbiology …, 2017 - Am Soc Microbiol
The fungal lineage is one of the three large eukaryotic lineages that dominate terrestrial
ecosystems. They share a common ancestor with animals in the eukaryotic supergroup …

[HTML][HTML] The Sordariomycetes: an expanding resource with Big Data for mining in evolutionary genomics and transcriptomics

Z Wang, W Kim, YW Wang, E Yakubovich… - Frontiers in Fungal …, 2023 - frontiersin.org
Advances in genomics and transcriptomics accompanying the rapid accumulation of omics
data have provided new tools that have transformed and expanded the traditional concepts …

[PDF][PDF] Assessment of fungal diversity in the environment using metagenomics: a decade in review

S Cuadros-Orellana, LR Leite, A Smith… - Fungal Genomics & …, 2013 - researchgate.net
Fungi are ubiquitous inhabitants of soil and aquatic environments, and they establish and
maintain either parasitic or symbiotic relationships with animals and plants. They are major …

A phylogenomic analysis of the Ascomycota

B Robbertse, JB Reeves, CL Schoch… - Fungal genetics and …, 2006 - Elsevier
An automated procedure was developed to extract orthologous sequences from fungal
genomes and incorporate them into phylogenomic analyses in a timely and efficient manner …

[HTML][HTML] Fungal transcriptomics

V Bhadauria, L Popescu, WS Zhao, YL Peng - Microbiological Research, 2007 - Elsevier
We have now entered in the post-genomic era, where we have knowledge of plethora of
fungal genomes and cutting edge technology is available to study global mRNA, protein and …

Scientific advances with Aspergillus species that are used for food and biotech applications

R Te Biesebeke, E Record - Microbes and environments, 2008 - jstage.jst.go.jp
Yeast and filamentous fungi have been used for centuries in diverse biotechnological
processes. Fungal fermentation technology is traditionally used in relation to food …

[HTML][HTML] e-Fungi: a data resource for comparative analysis of fungal genomes

C Hedeler, HM Wong, MJ Cornell, I Alam, DM Soanes… - BMC genomics, 2007 - Springer
Background The number of sequenced fungal genomes is ever increasing, with about 200
genomes already fully sequenced or in progress. Only a small percentage of those genomes …

[HTML][HTML] Mildew-omics: how global analyses aid the understanding of life and evolution of powdery mildews

LV Bindschedler, R Panstruga, PD Spanu - Frontiers in plant science, 2016 - frontiersin.org
The common powdery mildew plant diseases are caused by ascomycete fungi of the order
Erysiphales. Their characteristic life style as obligate biotrophs renders functional analyses …

Current status of systems biology in Aspergilli

MR Andersen, J Nielsen - Fungal Genetics and Biology, 2009 - Elsevier
In this review, we present a comprehensive overview of the current status of genomics,
transcriptomics, proteomics, metabolomics, and metabolic modeling in Aspergillus species …