Recent advances on detection and characterization of fruit tree viruses using high-throughput sequencing technologies

VI Maliogka, A Minafra, P Saldarelli, AB Ruiz-García… - Viruses, 2018 - mdpi.com
Perennial crops, such as fruit trees, are infected by many viruses, which are transmitted
through vegetative propagation and grafting of infected plant material. Some of these …

Application of next generation sequencing for diagnostic testing of tree fruit viruses and viroids

M Rott, Y Xiang, I Boyes, M Belton, H Saeed… - Plant …, 2017 - Am Phytopath Society
Conventional detection of viruses and virus-like diseases of plants is accomplished using a
combination of molecular, serological, and biological indexing. These are the primary tools …

Is there a “biological desert” with the discovery of new plant viruses? A retrospective analysis for new fruit tree viruses

W Hou, S Li, S Massart - Frontiers in Microbiology, 2020 - frontiersin.org
High throughput sequencing technologies accelerated the pace of discovery and
identification of new viral species. Nevertheless, biological characterization of a new virus is …

Simultaneous detection and identification of eight stone fruit viruses by one-step RT-PCR

JA Sanchez-Navarro, F Aparicio, MC Herranz… - European Journal of …, 2005 - Springer
A sensitive and reliable one step RT-PCR reaction with an internal control has been
developed to detect and differentiate eight important viruses that affect stone fruit tress …

High throughput sequencing for plant virus detection and discovery

DEV Villamor, T Ho, M Al Rwahnih, RR Martin… - …, 2019 - Am Phytopath Society
Over the last decade, virologists have discovered an unprecedented number of viruses
using high throughput sequencing (HTS), which led to the advancement of our knowledge …

Genomic, morphological and biological traits of the viruses infecting major fruit trees

M Umer, J Liu, H You, C Xu, K Dong, N Luo, L Kong… - Viruses, 2019 - mdpi.com
Banana trees, citrus fruit trees, pome fruit trees, grapevines, mango trees, and stone fruit
trees are major fruit trees cultured worldwide and correspond to nearly 90% of the global …

Polyvalent detection of fruit tree tricho, capillo and foveaviruses by nested RT-PCR using degenerated and inosine containing primers (PDO RT-PCR)

L Svanella-Dumas, MJ Dulucq, T Candresse… - … Symposium on Virus …, 2000 - actahort.org
A polyvalent nested RT-PCR test was developed to detect five well characterised
filamentous fruit tree viruses, namely ACLSV, SCGRMV, ASPV, ASGV and CVA. Short …

Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and …

R Bester, G Cook, JHJ Breytenbach, C Steyn… - Virology Journal, 2021 - Springer
Background High-throughput sequencing (HTS) has been applied successfully for virus and
viroid discovery in many agricultural crops leading to the current drive to apply this …

Global advances in tomato virome research: current status and the impact of high-throughput sequencing

MPS Rivarez, A Vučurović, N Mehle… - Frontiers in …, 2021 - frontiersin.org
Viruses cause a big fraction of economically important diseases in major crops, including
tomato. In the past decade (2011–2020), many emerging or re-emerging tomato-infecting …

High-throughput sequencing identifies novel viruses in nectarine: Insights to the etiology of stem-pitting disease

DEV Villamor, TA Mekuria, SS Pillai… - …, 2016 - Am Phytopath Society
Recent studies have shown the superiority of high-throughput sequencing (HTS) technology
over many standard protocols for pathogen detection. HTS was initiated on fruit tree …