Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501
Pseudomonas stutzeri A1501 is an endophytic bacterium capable of nitrogen fixation. This
strain has been isolated from the rice rhizosphere and provides the plant with fixed nitrogen …
strain has been isolated from the rice rhizosphere and provides the plant with fixed nitrogen …
[HTML][HTML] Reconstruction and metabolic profiling of the genome-scale metabolic network model of pseudomonas stutzeri a1501
Pseudomonas stutzeri A1501 is a non-fluorescent denitrifying bacteria that belongs to the
gram-negative bacterial group. As a prominent strain in the fields of agriculture and …
gram-negative bacterial group. As a prominent strain in the fields of agriculture and …
High‐quality genome‐scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities
Genome‐scale reconstructions of metabolism are computational species‐specific
knowledge bases able to compute systemic metabolic properties. We present a …
knowledge bases able to compute systemic metabolic properties. We present a …
Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models
Over 100 genome-scale metabolic networks (GSMNs) have been published in recent years
and widely used for phenotype prediction and pathway design. However, GSMNs for a …
and widely used for phenotype prediction and pathway design. However, GSMNs for a …
Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology
J Puchałka, MA Oberhardt, M Godinho… - PLoS computational …, 2008 - journals.plos.org
A cornerstone of biotechnology is the use of microorganisms for the efficient production of
chemicals and the elimination of harmful waste. Pseudomonas putida is an archetype of …
chemicals and the elimination of harmful waste. Pseudomonas putida is an archetype of …
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: i JN746 as a cell factory
Background Pseudomonas putida is the best studied pollutant degradative bacteria and is
harnessed by industrial biotechnology to synthesize fine chemicals. Since the publication of …
harnessed by industrial biotechnology to synthesize fine chemicals. Since the publication of …
Reconciling in vivo and in silico key biological parameters of Pseudomonas putidaKT2440 during growth on glucose under carbon-limited condition
JBJH van Duuren, J Puchałka, AE Mars, R Bücker… - BMC …, 2013 - Springer
Background Genome scale metabolic reconstructions are developed to efficiently engineer
biocatalysts and bioprocesses based on a rational approach. However, in most …
biocatalysts and bioprocesses based on a rational approach. However, in most …
Reconstruction and analysis of a three‐compartment genome‐scale metabolic model for Pseudomonas fluorescens
X Huang, YH Lin - Biotechnology and applied biochemistry, 2020 - Wiley Online Library
With the versatile metabolic diversity, Pseudomonas fluorescens is a potential candidate in
petroleum aromatic hydrocarbon (PAH) bioremediation. Genome‐scale metabolic model …
petroleum aromatic hydrocarbon (PAH) bioremediation. Genome‐scale metabolic model …
From DNA to FBA: how to build your own genome-scale metabolic model
Microbiological studies are increasingly relying on in silico methods to perform exploration
and rapid analysis of genomic data, and functional genomics studies are supplemented by …
and rapid analysis of genomic data, and functional genomics studies are supplemented by …
A reconciliation of genome-scale metabolic network model of Zymomonas mobilis ZM4
Zymomonas mobilis ZM4 has recently been used for a variety of biotechnological purposes.
To rationally enhance its metabolic performance, a reliable genome-scale metabolic …
To rationally enhance its metabolic performance, a reliable genome-scale metabolic …