DeepBindRG: a deep learning based method for estimating effective protein–ligand affinity

H Zhang, L Liao, KM Saravanan, P Yin, Y Wei - PeerJ, 2019 - peerj.com
Proteins interact with small molecules to modulate several important cellular functions. Many
acute diseases were cured by small molecule binding in the active site of protein either by …

SE-OnionNet: a convolution neural network for protein–ligand binding affinity prediction

S Wang, D Liu, M Ding, Z Du, Y Zhong, T Song… - Frontiers in …, 2021 - frontiersin.org
Deep learning methods, which can predict the binding affinity of a drug–target protein
interaction, reduce the time and cost of drug discovery. In this study, we propose a novel …

DeepDTAF: a deep learning method to predict protein–ligand binding affinity

K Wang, R Zhou, Y Li, M Li - Briefings in Bioinformatics, 2021 - academic.oup.com
Biomolecular recognition between ligand and protein plays an essential role in drug
discovery and development. However, it is extremely time and resource consuming to …

DeepAtom: A framework for protein-ligand binding affinity prediction

Y Li, MA Rezaei, C Li, X Li - 2019 IEEE international …, 2019 - ieeexplore.ieee.org
The cornerstone of computational drug design is the calculation of binding affinity between
two biological counterparts especially a chemical compound, ie a ligand, and a protein …

CAPLA: improved prediction of protein–ligand binding affinity by a deep learning approach based on a cross-attention mechanism

Z Jin, T Wu, T Chen, D Pan, X Wang, J Xie… - …, 2023 - academic.oup.com
Motivation Accurate and rapid prediction of protein–ligand binding affinity is a great
challenge currently encountered in drug discovery. Recent advances have manifested a …

DEELIG: A deep learning approach to predict protein-ligand binding affinity

A Ahmed, B Mam… - Bioinformatics and Biology …, 2021 - journals.sagepub.com
Protein-ligand binding prediction has extensive biological significance. Binding affinity helps
in understanding the degree of protein-ligand interactions and is a useful measure in drug …

AK-score: accurate protein-ligand binding affinity prediction using an ensemble of 3D-convolutional neural networks

Y Kwon, WH Shin, J Ko, J Lee - International journal of molecular …, 2020 - mdpi.com
Accurate prediction of the binding affinity of a protein-ligand complex is essential for efficient
and successful rational drug design. Therefore, many binding affinity prediction methods …

Binding affinity prediction for protein–ligand complex using deep attention mechanism based on intermolecular interactions

S Seo, J Choi, S Park, J Ahn - BMC bioinformatics, 2021 - Springer
Background Accurate prediction of protein–ligand binding affinity is important for lowering
the overall cost of drug discovery in structure-based drug design. For accurate predictions …

Deep learning in drug design: protein-ligand binding affinity prediction

MA Rezaei, Y Li, D Wu, X Li, C Li - IEEE/ACM transactions on …, 2020 - ieeexplore.ieee.org
Computational drug design relies on the calculation of binding strength between two
biological counterparts especially a chemical compound, ie, a ligand, and a protein …

Onionnet: a multiple-layer intermolecular-contact-based convolutional neural network for protein–ligand binding affinity prediction

L Zheng, J Fan, Y Mu - ACS omega, 2019 - ACS Publications
Computational drug discovery provides an efficient tool for helping large-scale lead
molecule screening. One of the major tasks of lead discovery is identifying molecules with …