Deepbindgcn: Integrating molecular vector representation with graph convolutional neural networks for protein–ligand interaction prediction
H Zhang, KM Saravanan, JZH Zhang - Molecules, 2023 - mdpi.com
The core of large-scale drug virtual screening is to select the binders accurately and
efficiently with high affinity from large libraries of small molecules in which non-binders are …
efficiently with high affinity from large libraries of small molecules in which non-binders are …
[HTML][HTML] Predicting or pretending: artificial intelligence for protein-ligand interactions lack of sufficiently large and unbiased datasets
Predicting protein-ligand interactions using artificial intelligence (AI) models has attracted
great interest in recent years. However, data-driven AI models unequivocally suffer from a …
great interest in recent years. However, data-driven AI models unequivocally suffer from a …
GraphscoreDTA: optimized graph neural network for protein–ligand binding affinity prediction
Motivation Computational approaches for identifying the protein–ligand binding affinity can
greatly facilitate drug discovery and development. At present, many deep learning-based …
greatly facilitate drug discovery and development. At present, many deep learning-based …
graphDelta: MPNN scoring function for the affinity prediction of protein–ligand complexes
In this work, we present graph-convolutional neural networks for the prediction of binding
constants of protein–ligand complexes. We derived the model using multi task learning …
constants of protein–ligand complexes. We derived the model using multi task learning …
Hac-net: A hybrid attention-based convolutional neural network for highly accurate protein–ligand binding affinity prediction
GW Kyro, RI Brent, VS Batista - Journal of Chemical Information …, 2023 - ACS Publications
Applying deep learning concepts from image detection and graph theory has greatly
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …
Sfcnn: a novel scoring function based on 3D convolutional neural network for accurate and stable protein–ligand affinity prediction
Y Wang, Z Wei, L Xi - BMC bioinformatics, 2022 - Springer
Background Computer-aided drug design provides an effective method of identifying lead
compounds. However, success rates are significantly bottlenecked by the lack of accurate …
compounds. However, success rates are significantly bottlenecked by the lack of accurate …
Effects of data quality and quantity on deep learning for protein-ligand binding affinity prediction
FJ Fan, Y Shi - Bioorganic & Medicinal Chemistry, 2022 - Elsevier
Prediction of protein-ligand binding affinities is crucial for computational drug discovery. A
number of deep learning approaches have been developed in recent years to improve the …
number of deep learning approaches have been developed in recent years to improve the …
DeepCDA: deep cross-domain compound–protein affinity prediction through LSTM and convolutional neural networks
Motivation An essential part of drug discovery is the accurate prediction of the binding affinity
of new compound–protein pairs. Most of the standard computational methods assume that …
of new compound–protein pairs. Most of the standard computational methods assume that …
KDEEP: Protein–Ligand Absolute Binding Affinity Prediction via 3D-Convolutional Neural Networks
Accurately predicting protein–ligand binding affinities is an important problem in
computational chemistry since it can substantially accelerate drug discovery for virtual …
computational chemistry since it can substantially accelerate drug discovery for virtual …
Planet: a multi-objective graph neural network model for protein–ligand binding affinity prediction
X Zhang, H Gao, H Wang, Z Chen… - Journal of Chemical …, 2023 - ACS Publications
Predicting protein–ligand binding affinity is a central issue in drug design. Various deep
learning models have been published in recent years, where many of them rely on 3D …
learning models have been published in recent years, where many of them rely on 3D …