Experimental validation of in silico estimated biomass yields of Pseudomonas putida KT2440

SB Hintermayer, D Weuster‐Botz - Biotechnology Journal, 2017 - Wiley Online Library
Pseudomonas putida is rapidly becoming a microbial cell platform for biotechnological
applications. In order to understand genotype‐phenotype relationships genome scale …

Reconciling in vivo and in silico key biological parameters of Pseudomonas putidaKT2440 during growth on glucose under carbon-limited condition

JBJH van Duuren, J Puchałka, AE Mars, R Bücker… - BMC …, 2013 - Springer
Background Genome scale metabolic reconstructions are developed to efficiently engineer
biocatalysts and bioprocesses based on a rational approach. However, in most …

Fine‐tuning the P. pastoris iMT1026 genome‐scale metabolic model for improved prediction of growth on methanol or glycerol as sole carbon sources

M Tomàs‐Gamisans, P Ferrer… - Microbial biotechnology, 2018 - Wiley Online Library
The methylotrophic yeast Pichia pastoris (Komagataella spp.) is widely used as cell factory
for recombinant protein production. In the past recent years, important breakthroughs in the …

Large-scale kinetic metabolic models of Pseudomonas putida KT2440 for consistent design of metabolic engineering strategies

M Tokic, V Hatzimanikatis, L Miskovic - Biotechnology for biofuels, 2020 - Springer
Background Pseudomonas putida is a promising candidate for the industrial production of
biofuels and biochemicals because of its high tolerance to toxic compounds and its ability to …

Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12

S Han, D Kim, Y Kim, SH Yoon - BMC genomics, 2024 - Springer
Background Pseudomonas putida S12 is a gram-negative bacterium renowned for its high
tolerance to organic solvents and metabolic versatility, making it attractive for various …

[HTML][HTML] Reconstruction and metabolic profiling of the genome-scale metabolic network model of pseudomonas stutzeri a1501

Q Yuan, F Wei, X Deng, A Li, Z Shi, Z Mao, F Li… - Synthetic and Systems …, 2023 - Elsevier
Pseudomonas stutzeri A1501 is a non-fluorescent denitrifying bacteria that belongs to the
gram-negative bacterial group. As a prominent strain in the fields of agriculture and …

In silico genome‐scale metabolic analysis of Pseudomonas putida KT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival

SB Sohn, TY Kim, JM Park, SY Lee - Biotechnology journal, 2010 - Wiley Online Library
Genome‐scale metabolic models have been appearing with increasing frequency and have
been employed in a wide range of biotechnological applications as well as in biological …

Analysis of Pseudomonas putida growth on non‐trivial carbon sources using transcriptomics and genome‐scale modelling

I D'Arrigo, JGR Cardoso, M Rennig… - Environmental …, 2019 - Wiley Online Library
Pseudomonas putida is characterized by a versatile metabolism and stress tolerance traits
that allow the bacterium to cope with different environmental conditions. In this work, the …

Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501

P Babaei, SA Marashi, S Asad - Molecular BioSystems, 2015 - pubs.rsc.org
Pseudomonas stutzeri A1501 is an endophytic bacterium capable of nitrogen fixation. This
strain has been isolated from the rice rhizosphere and provides the plant with fixed nitrogen …

[HTML][HTML] In silico prediction of large-scale microbial production performance: constraints for getting proper data-driven models

J Zieringer, R Takors - Computational and structural biotechnology journal, 2018 - Elsevier
Industrial bioreactors range from 10.000 to 700.000 L and characteristically show different
zones of substrate availabilities, dissolved gas concentrations and pH values reflecting …