Experimental validation of in silico estimated biomass yields of Pseudomonas putida KT2440
SB Hintermayer, D Weuster‐Botz - Biotechnology Journal, 2017 - Wiley Online Library
Pseudomonas putida is rapidly becoming a microbial cell platform for biotechnological
applications. In order to understand genotype‐phenotype relationships genome scale …
applications. In order to understand genotype‐phenotype relationships genome scale …
Reconciling in vivo and in silico key biological parameters of Pseudomonas putidaKT2440 during growth on glucose under carbon-limited condition
JBJH van Duuren, J Puchałka, AE Mars, R Bücker… - BMC …, 2013 - Springer
Background Genome scale metabolic reconstructions are developed to efficiently engineer
biocatalysts and bioprocesses based on a rational approach. However, in most …
biocatalysts and bioprocesses based on a rational approach. However, in most …
Fine‐tuning the P. pastoris iMT1026 genome‐scale metabolic model for improved prediction of growth on methanol or glycerol as sole carbon sources
M Tomàs‐Gamisans, P Ferrer… - Microbial biotechnology, 2018 - Wiley Online Library
The methylotrophic yeast Pichia pastoris (Komagataella spp.) is widely used as cell factory
for recombinant protein production. In the past recent years, important breakthroughs in the …
for recombinant protein production. In the past recent years, important breakthroughs in the …
Large-scale kinetic metabolic models of Pseudomonas putida KT2440 for consistent design of metabolic engineering strategies
Background Pseudomonas putida is a promising candidate for the industrial production of
biofuels and biochemicals because of its high tolerance to toxic compounds and its ability to …
biofuels and biochemicals because of its high tolerance to toxic compounds and its ability to …
Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12
S Han, D Kim, Y Kim, SH Yoon - BMC genomics, 2024 - Springer
Background Pseudomonas putida S12 is a gram-negative bacterium renowned for its high
tolerance to organic solvents and metabolic versatility, making it attractive for various …
tolerance to organic solvents and metabolic versatility, making it attractive for various …
[HTML][HTML] Reconstruction and metabolic profiling of the genome-scale metabolic network model of pseudomonas stutzeri a1501
Pseudomonas stutzeri A1501 is a non-fluorescent denitrifying bacteria that belongs to the
gram-negative bacterial group. As a prominent strain in the fields of agriculture and …
gram-negative bacterial group. As a prominent strain in the fields of agriculture and …
In silico genome‐scale metabolic analysis of Pseudomonas putida KT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival
Genome‐scale metabolic models have been appearing with increasing frequency and have
been employed in a wide range of biotechnological applications as well as in biological …
been employed in a wide range of biotechnological applications as well as in biological …
Analysis of Pseudomonas putida growth on non‐trivial carbon sources using transcriptomics and genome‐scale modelling
I D'Arrigo, JGR Cardoso, M Rennig… - Environmental …, 2019 - Wiley Online Library
Pseudomonas putida is characterized by a versatile metabolism and stress tolerance traits
that allow the bacterium to cope with different environmental conditions. In this work, the …
that allow the bacterium to cope with different environmental conditions. In this work, the …
Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501
Pseudomonas stutzeri A1501 is an endophytic bacterium capable of nitrogen fixation. This
strain has been isolated from the rice rhizosphere and provides the plant with fixed nitrogen …
strain has been isolated from the rice rhizosphere and provides the plant with fixed nitrogen …
[HTML][HTML] In silico prediction of large-scale microbial production performance: constraints for getting proper data-driven models
J Zieringer, R Takors - Computational and structural biotechnology journal, 2018 - Elsevier
Industrial bioreactors range from 10.000 to 700.000 L and characteristically show different
zones of substrate availabilities, dissolved gas concentrations and pH values reflecting …
zones of substrate availabilities, dissolved gas concentrations and pH values reflecting …