[HTML][HTML] Reconciling in vivo and in silico key biological parameters of Pseudomonas putidaKT2440 during growth on glucose under carbon-limited condition

JBJH van Duuren, J Puchałka, AE Mars, R Bücker… - BMC …, 2013 - Springer
Background Genome scale metabolic reconstructions are developed to efficiently engineer
biocatalysts and bioprocesses based on a rational approach. However, in most …

[HTML][HTML] Large-scale kinetic metabolic models of Pseudomonas putida KT2440 for consistent design of metabolic engineering strategies

M Tokic, V Hatzimanikatis, L Miskovic - Biotechnology for biofuels, 2020 - Springer
Background Pseudomonas putida is a promising candidate for the industrial production of
biofuels and biochemicals because of its high tolerance to toxic compounds and its ability to …

Experimental validation of in silico estimated biomass yields of Pseudomonas putida KT2440

SB Hintermayer, D Weuster‐Botz - Biotechnology Journal, 2017 - Wiley Online Library
Pseudomonas putida is rapidly becoming a microbial cell platform for biotechnological
applications. In order to understand genotype‐phenotype relationships genome scale …

Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501

P Babaei, SA Marashi, S Asad - Molecular BioSystems, 2015 - pubs.rsc.org
Pseudomonas stutzeri A1501 is an endophytic bacterium capable of nitrogen fixation. This
strain has been isolated from the rice rhizosphere and provides the plant with fixed nitrogen …

[HTML][HTML] A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: i JN746 as a cell factory

J Nogales, BØ Palsson, I Thiele - BMC systems biology, 2008 - Springer
Background Pseudomonas putida is the best studied pollutant degradative bacteria and is
harnessed by industrial biotechnology to synthesize fine chemicals. Since the publication of …

In silico genome‐scale metabolic analysis of Pseudomonas putida KT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival

SB Sohn, TY Kim, JM Park, SY Lee - Biotechnology journal, 2010 - Wiley Online Library
Genome‐scale metabolic models have been appearing with increasing frequency and have
been employed in a wide range of biotechnological applications as well as in biological …

[HTML][HTML] Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in …

J Puchałka, MA Oberhardt, M Godinho… - PLoS computational …, 2008 - journals.plos.org
A cornerstone of biotechnology is the use of microorganisms for the efficient production of
chemicals and the elimination of harmful waste. Pseudomonas putida is an archetype of …

High‐quality genome‐scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities

J Nogales, J Mueller, S Gudmundsson… - Environmental …, 2020 - Wiley Online Library
Genome‐scale reconstructions of metabolism are computational species‐specific
knowledge bases able to compute systemic metabolic properties. We present a …

[HTML][HTML] Generation and Evaluation of a Genome-Scale Metabolic Network Model of Synechococcus elongatus PCC7942

J Triana, A Montagud, M Siurana, D Fuente… - Metabolites, 2014 - mdpi.com
The reconstruction of genome-scale metabolic models and their applications represent a
great advantage of systems biology. Through their use as metabolic flux simulation models …

[HTML][HTML] Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models

Q Yuan, T Huang, P Li, T Hao, F Li, H Ma, Z Wang… - PloS one, 2017 - journals.plos.org
Over 100 genome-scale metabolic networks (GSMNs) have been published in recent years
and widely used for phenotype prediction and pathway design. However, GSMNs for a …