[HTML][HTML] Reconciling in vivo and in silico key biological parameters of Pseudomonas putidaKT2440 during growth on glucose under carbon-limited condition
JBJH van Duuren, J Puchałka, AE Mars, R Bücker… - BMC …, 2013 - Springer
Background Genome scale metabolic reconstructions are developed to efficiently engineer
biocatalysts and bioprocesses based on a rational approach. However, in most …
biocatalysts and bioprocesses based on a rational approach. However, in most …
[HTML][HTML] Large-scale kinetic metabolic models of Pseudomonas putida KT2440 for consistent design of metabolic engineering strategies
Background Pseudomonas putida is a promising candidate for the industrial production of
biofuels and biochemicals because of its high tolerance to toxic compounds and its ability to …
biofuels and biochemicals because of its high tolerance to toxic compounds and its ability to …
Experimental validation of in silico estimated biomass yields of Pseudomonas putida KT2440
SB Hintermayer, D Weuster‐Botz - Biotechnology Journal, 2017 - Wiley Online Library
Pseudomonas putida is rapidly becoming a microbial cell platform for biotechnological
applications. In order to understand genotype‐phenotype relationships genome scale …
applications. In order to understand genotype‐phenotype relationships genome scale …
Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501
Pseudomonas stutzeri A1501 is an endophytic bacterium capable of nitrogen fixation. This
strain has been isolated from the rice rhizosphere and provides the plant with fixed nitrogen …
strain has been isolated from the rice rhizosphere and provides the plant with fixed nitrogen …
[HTML][HTML] A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: i JN746 as a cell factory
Background Pseudomonas putida is the best studied pollutant degradative bacteria and is
harnessed by industrial biotechnology to synthesize fine chemicals. Since the publication of …
harnessed by industrial biotechnology to synthesize fine chemicals. Since the publication of …
In silico genome‐scale metabolic analysis of Pseudomonas putida KT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival
Genome‐scale metabolic models have been appearing with increasing frequency and have
been employed in a wide range of biotechnological applications as well as in biological …
been employed in a wide range of biotechnological applications as well as in biological …
[HTML][HTML] Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in …
J Puchałka, MA Oberhardt, M Godinho… - PLoS computational …, 2008 - journals.plos.org
A cornerstone of biotechnology is the use of microorganisms for the efficient production of
chemicals and the elimination of harmful waste. Pseudomonas putida is an archetype of …
chemicals and the elimination of harmful waste. Pseudomonas putida is an archetype of …
High‐quality genome‐scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities
Genome‐scale reconstructions of metabolism are computational species‐specific
knowledge bases able to compute systemic metabolic properties. We present a …
knowledge bases able to compute systemic metabolic properties. We present a …
[HTML][HTML] Generation and Evaluation of a Genome-Scale Metabolic Network Model of Synechococcus elongatus PCC7942
J Triana, A Montagud, M Siurana, D Fuente… - Metabolites, 2014 - mdpi.com
The reconstruction of genome-scale metabolic models and their applications represent a
great advantage of systems biology. Through their use as metabolic flux simulation models …
great advantage of systems biology. Through their use as metabolic flux simulation models …
[HTML][HTML] Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models
Over 100 genome-scale metabolic networks (GSMNs) have been published in recent years
and widely used for phenotype prediction and pathway design. However, GSMNs for a …
and widely used for phenotype prediction and pathway design. However, GSMNs for a …