Learning protein-ligand binding affinity with atomic environment vectors
Scoring functions for the prediction of protein-ligand binding affinity have seen renewed
interest in recent years when novel machine learning and deep learning methods started to …
interest in recent years when novel machine learning and deep learning methods started to …
KDEEP: Protein–Ligand Absolute Binding Affinity Prediction via 3D-Convolutional Neural Networks
Accurately predicting protein–ligand binding affinities is an important problem in
computational chemistry since it can substantially accelerate drug discovery for virtual …
computational chemistry since it can substantially accelerate drug discovery for virtual …
[HTML][HTML] OnionNet-2: a convolutional neural network model for predicting protein-ligand binding affinity based on residue-atom contacting shells
One key task in virtual screening is to accurately predict the binding affinity (delta-G) of
protein-ligand complexes. Recently, deep learning (DL) has significantly increased the …
protein-ligand complexes. Recently, deep learning (DL) has significantly increased the …
BgN-Score and BsN-Score: bagging and boosting based ensemble neural networks scoring functions for accurate binding affinity prediction of protein-ligand …
HM Ashtawy, NR Mahapatra - BMC bioinformatics, 2015 - Springer
Background Accurately predicting the binding affinities of large sets of protein-ligand
complexes is a key challenge in computational biomolecular science, with applications in …
complexes is a key challenge in computational biomolecular science, with applications in …
Hac-net: A hybrid attention-based convolutional neural network for highly accurate protein–ligand binding affinity prediction
GW Kyro, RI Brent, VS Batista - Journal of Chemical Information …, 2023 - ACS Publications
Applying deep learning concepts from image detection and graph theory has greatly
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …
Extended connectivity interaction features: improving binding affinity prediction through chemical description
Motivation Machine-learning scoring functions (SFs) have been found to outperform
standard SFs for binding affinity prediction of protein–ligand complexes. A plethora of …
standard SFs for binding affinity prediction of protein–ligand complexes. A plethora of …
Binding affinity prediction by pairwise function based on neural network
We present a new approach to estimate the binding affinity from given three-dimensional
poses of protein–ligand complexes. In this scheme, every protein–ligand atom pair makes …
poses of protein–ligand complexes. In this scheme, every protein–ligand atom pair makes …
[HTML][HTML] Scoring functions for protein-ligand binding affinity prediction using structure-based deep learning: A review
The rapid and accurate in silico prediction of protein-ligand binding free energies or binding
affinities has the potential to transform drug discovery. In recent years, several deep learning …
affinities has the potential to transform drug discovery. In recent years, several deep learning …
AK-score: accurate protein-ligand binding affinity prediction using an ensemble of 3D-convolutional neural networks
Accurate prediction of the binding affinity of a protein-ligand complex is essential for efficient
and successful rational drug design. Therefore, many binding affinity prediction methods …
and successful rational drug design. Therefore, many binding affinity prediction methods …
DLSSAffinity: protein–ligand binding affinity prediction via a deep learning model
H Wang, H Liu, S Ning, C Zeng, Y Zhao - Physical Chemistry Chemical …, 2022 - pubs.rsc.org
Evaluating the protein–ligand binding affinity is a substantial part of the computer-aided drug
discovery process. Most of the proposed computational methods predict protein–ligand …
discovery process. Most of the proposed computational methods predict protein–ligand …