RNA-seq data science: From raw data to effective interpretation

D Deshpande, K Chhugani, Y Chang… - Frontiers in …, 2023 - frontiersin.org
RNA sequencing (RNA-seq) has become an exemplary technology in modern biology and
clinical science. Its immense popularity is due in large part to the continuous efforts of the …

Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology

AS Thind, I Monga, PK Thakur, P Kumari… - Briefings in …, 2021 - academic.oup.com
Significant innovations in next-generation sequencing techniques and bioinformatics tools
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …

Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis

F Finotello, B Di Camillo - Briefings in functional genomics, 2015 - academic.oup.com
RNA-seq is a methodology for RNA profiling based on next-generation sequencing that
enables to measure and compare gene expression patterns at unprecedented resolution …

[HTML][HTML] Analysis of whole transcriptome sequencing data: workflow and software

IS Yang, S Kim - Genomics & informatics, 2015 - ncbi.nlm.nih.gov
RNA is a polymeric molecule implicated in various biological processes, such as the coding,
decoding, regulation, and expression of genes. Numerous studies have examined RNA …

RNA-Seq: a revolutionary tool for transcriptomics

Z Wang, M Gerstein, M Snyder - Nature reviews genetics, 2009 - nature.com
RNA-Seq is a recently developed approach to transcriptome profiling that uses deep-
sequencing technologies. Studies using this method have already altered our view of the …

Informatics for RNA sequencing: a web resource for analysis on the cloud

M Griffith, JR Walker, NC Spies… - PLoS computational …, 2015 - journals.plos.org
Massively parallel RNA sequencing (RNA-seq) has rapidly become the assay of choice for
interrogating RNA transcript abundance and diversity. This article provides a detailed …

RNA‐Seq: a method for comprehensive transcriptome analysis

U Nagalakshmi, K Waern… - Current protocols in …, 2010 - Wiley Online Library
A recently developed technique called RNA Sequencing (RNA‐Seq) uses massively
parallel sequencing to allow transcriptome analyses of genomes at a far higher resolution …

Advancing RNA-seq analysis

BJ Haas, MC Zody - Nature biotechnology, 2010 - nature.com
Advancing RNA-Seq analysis | Nature Biotechnology Skip to main content Thank you for
visiting nature.com. You are using a browser version with limited support for CSS. To obtain the …

RNA sequencing: the teenage years

R Stark, M Grzelak, J Hadfield - Nature Reviews Genetics, 2019 - nature.com
Over the past decade, RNA sequencing (RNA-seq) has become an indispensable tool for
transcriptome-wide analysis of differential gene expression and differential splicing of …

Biases in small RNA deep sequencing data

CA Raabe, TH Tang, J Brosius… - Nucleic acids …, 2014 - academic.oup.com
High-throughput RNA sequencing (RNA-seq) is considered a powerful tool for novel gene
discovery and fine-tuned transcriptional profiling. The digital nature of RNA-seq is also …