RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
Ultra-high-throughput sequencing is emerging as an attractive alternative to microarrays for
genotyping, analysis of methylation patterns, and identification of transcription factor binding …
genotyping, analysis of methylation patterns, and identification of transcription factor binding …
RNA-Seq and its applications: a new technology for transcriptomics
YX Qi, YB Liu, WH Rong - Yi Chuan= Hereditas, 2011 - europepmc.org
The transcriptome is the complete set of transcripts for certain type of cells or tissues in a
specific developmental stage or physiological condition. Transcriptome analysis can provide …
specific developmental stage or physiological condition. Transcriptome analysis can provide …
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
Recent rapid advances in next generation RNA sequencing (RNA-Seq)-based provide
researchers with unprecedentedly large data sets and open new perspectives in …
researchers with unprecedentedly large data sets and open new perspectives in …
RNA-seq differential expression studies: more sequence or more replication?
Motivation: RNA-seq is replacing microarrays as the primary tool for gene expression
studies. Many RNA-seq studies have used insufficient biological replicates, resulting in low …
studies. Many RNA-seq studies have used insufficient biological replicates, resulting in low …
Introduction to single‐cell RNA sequencing
TK Olsen, N Baryawno - Current protocols in molecular biology, 2018 - Wiley Online Library
During the last decade, high‐throughput sequencing methods have revolutionized the entire
field of biology. The opportunity to study entire transcriptomes in great detail using RNA …
field of biology. The opportunity to study entire transcriptomes in great detail using RNA …
Differential expression in RNA-seq: a matter of depth
Next-generation sequencing (NGS) technologies are revolutionizing genome research, and
in particular, their application to transcriptomics (RNA-seq) is increasingly being used for …
in particular, their application to transcriptomics (RNA-seq) is increasingly being used for …
Comparative analysis of RNA sequencing methods for degraded or low-input samples
RNA-seq is an effective method for studying the transcriptome, but it can be difficult to apply
to scarce or degraded RNA from fixed clinical samples, rare cell populations or cadavers …
to scarce or degraded RNA from fixed clinical samples, rare cell populations or cadavers …
Empirical assessment of analysis workflows for differential expression analysis of human samples using RNA-Seq
Background RNA-Seq has supplanted microarrays as the preferred method of transcriptome-
wide identification of differentially expressed genes. However, RNA-Seq analysis is still …
wide identification of differentially expressed genes. However, RNA-Seq analysis is still …
[HTML][HTML] The START App: a web-based RNAseq analysis and visualization resource
Transcriptional profiling using RNA sequencing (RNAseq) has emerged as a powerful
methodology to quantify global gene expression patterns in various contexts from single …
methodology to quantify global gene expression patterns in various contexts from single …
Strand-specific libraries for high throughput RNA sequencing (RNA-Seq) prepared without poly (A) selection
Background High throughput DNA sequencing technology has enabled quantification of all
the RNAs in a cell or tissue, a method widely known as RNA sequencing (RNA-Seq) …
the RNAs in a cell or tissue, a method widely known as RNA sequencing (RNA-Seq) …