The importance of standardization for biodiversity comparisons: A case study using autonomous reef monitoring structures (ARMS) and metabarcoding to measure …

E Ransome, JB Geller, M Timmers, M Leray… - PLoS …, 2017 - journals.plos.org
The advancement of metabarcoding techniques, declining costs of high-throughput
sequencing and development of systematic sampling devices, such as autonomous reef …

[HTML][HTML] Please mind the gap–Visual census and cryptic biodiversity assessment at central Red Sea coral reefs

JK Pearman, H Anlauf, X Irigoien, S Carvalho - Marine Environmental …, 2016 - Elsevier
Coral reefs harbor the most diverse assemblages in the ocean, however, a large proportion
of the diversity is cryptic and, therefore, undetected by standard visual census techniques …

Beyond the visual: using metabarcoding to characterize the hidden reef cryptobiome

S Carvalho, E Aylagas, R Villalobos… - … of the Royal …, 2019 - royalsocietypublishing.org
In an era of coral reef degradation, our knowledge of ecological patterns in reefs is biased
towards large conspicuous organisms. The majority of biodiversity, however, inhabits small …

DNA metabarcoding marker choice skews perception of marine eukaryotic biodiversity

JM Casey, E Ransome, AG Collins… - Environmental …, 2021 - Wiley Online Library
DNA metabarcoding is an increasingly popular technique to investigate biodiversity;
however, many methodological unknowns remain, especially concerning the biases …

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

M Leray, N Knowlton - … of the National Academy of Sciences, 2015 - National Acad Sciences
Documenting the diversity of marine life is challenging because many species are cryptic,
small, and rare, and belong to poorly known groups. New sequencing technologies …

Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majority

JK Pearman, M Leray, R Villalobos, RJ Machida… - Scientific reports, 2018 - nature.com
Coral reefs harbor diverse assemblages of organisms yet the majority of this diversity is
hidden within the three dimensional structure of the reef and neglected using standard …

Digging for DNA at depth: rapid universal metabarcoding surveys (RUMS) as a tool to detect coral reef biodiversity across a depth gradient

JD DiBattista, JD Reimer, M Stat, GD Masucci, P Biondi… - PeerJ, 2019 - peerj.com
Background Effective biodiversity monitoring is fundamental in tracking changes in
ecosystems as it relates to commercial, recreational, and conservation interests. Current …

Seq'and ARMS shall find: DNA (meta) barcoding of Autonomous Reef Monitoring Structures across the tree of life uncovers hidden cryptobiome of tropical urban coral …

YCA Ip, JJM Chang, RM Oh, ZBR Quek… - Molecular …, 2023 - Wiley Online Library
Coral reefs are among the richest marine ecosystems on Earth, but there remains much
diversity hidden within cavities of complex reef structures awaiting discovery. While the …

Pan‐regional marine benthic cryptobiome biodiversity patterns revealed by metabarcoding Autonomous Reef Monitoring Structures

JK Pearman, G Chust, E Aylagas, E Villarino… - Molecular …, 2020 - Wiley Online Library
Abstract Autonomous Reef Monitoring Structures (ARMS) have been applied worldwide to
characterize the critical yet frequently overlooked biodiversity patterns of marine benthic …

eDNA metabarcoding survey reveals fine‐scale coral reef community variation across a remote, tropical island ecosystem

KM West, M Stat, ES Harvey, CL Skepper… - Molecular …, 2020 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding, a technique for retrieving multispecies DNA
from environmental samples, can detect a diverse array of marine species from filtered …