DeepRLI: A Multi-objective Framework for Universal Protein--Ligand Interaction Prediction

H Lin, S Wang, J Zhu, Y Li, J Pei, L Lai - arXiv preprint arXiv:2401.10806, 2024 - arxiv.org
Protein (receptor)--ligand interaction prediction is a critical component in computer-aided
drug design, significantly influencing molecular docking and virtual screening processes …

A versatile deep learning-based protein-ligand interaction prediction model for accurate binding affinity scoring and virtual screening

S Moon, SY Hwang, J Lim, WY Kim - arXiv preprint arXiv:2307.01066, 2023 - arxiv.org
Protein--ligand interaction (PLI) prediction is critical in drug discovery, aiding the
identification and enhancement of molecules that effectively bind to target proteins. Despite …

On Machine Learning Approaches for Protein-Ligand Binding Affinity Prediction

N Schapin, C Navarro, A Bou, G De Fabritiis - arXiv preprint arXiv …, 2024 - arxiv.org
Binding affinity optimization is crucial in early-stage drug discovery. While numerous
machine learning methods exist for predicting ligand potency, their comparative efficacy …

PIGNet2: a versatile deep learning-based protein–ligand interaction prediction model for binding affinity scoring and virtual screening

S Moon, SY Hwang, J Lim, WY Kim - Digital Discovery, 2024 - pubs.rsc.org
Prediction of protein–ligand interactions (PLI) plays a crucial role in drug discovery as it
guides the identification and optimization of molecules that effectively bind to target proteins …

Ligand binding prediction using protein structure graphs and residual graph attention networks

M Pandey, M Radaeva, H Mslati, O Garland… - Molecules, 2022 - mdpi.com
Computational prediction of ligand–target interactions is a crucial part of modern drug
discovery as it helps to bypass high costs and labor demands of in vitro and in vivo …

Multi-Level Contrastive Learning for Protein-Ligand Binding Residue Prediction

J Zhang, R Wang, L Wei - bioRxiv, 2023 - biorxiv.org
Protein-ligand interactions play a crucial role in various biological functions, with their
accurate prediction being pivotal for drug discovery and design processes. Traditional …

SPIN: SE (3)-Invariant Physics Informed Network for Binding Affinity Prediction

S Choi, S Seo, S Park - arXiv preprint arXiv:2407.11057, 2024 - arxiv.org
Accurate prediction of protein-ligand binding affinity is crucial for rapid and efficient drug
development. Recently, the importance of predicting binding affinity has led to increased …

Enhancing Generalizability in Protein–Ligand Binding Affinity Prediction with Multimodal Contrastive Learning

D Luo, D Liu, X Qu, L Dong, B Wang - Journal of Chemical …, 2024 - ACS Publications
Improving the generalization ability of scoring functions remains a major challenge in protein–
ligand binding affinity prediction. Many machine learning methods are limited by their …

GAABind: a geometry-aware attention-based network for accurate protein–ligand binding pose and binding affinity prediction

H Tan, Z Wang, G Hu - Briefings in Bioinformatics, 2024 - academic.oup.com
Protein–ligand interactions are increasingly profiled at high-throughput, playing a vital role
in lead compound discovery and drug optimization. Accurate prediction of binding pose and …

MGPLI: exploring multigranular representations for protein–ligand interaction prediction

J Wang, J Hu, H Sun, MD Xu, Y Yu, Y Liu… - …, 2022 - academic.oup.com
Motivation The capability to predict the potential drug binding affinity against a protein target
has always been a fundamental challenge in silico drug discovery. The traditional …