DeepRLI: A Multi-objective Framework for Universal Protein--Ligand Interaction Prediction
Protein (receptor)--ligand interaction prediction is a critical component in computer-aided
drug design, significantly influencing molecular docking and virtual screening processes …
drug design, significantly influencing molecular docking and virtual screening processes …
A versatile deep learning-based protein-ligand interaction prediction model for accurate binding affinity scoring and virtual screening
Protein--ligand interaction (PLI) prediction is critical in drug discovery, aiding the
identification and enhancement of molecules that effectively bind to target proteins. Despite …
identification and enhancement of molecules that effectively bind to target proteins. Despite …
On Machine Learning Approaches for Protein-Ligand Binding Affinity Prediction
Binding affinity optimization is crucial in early-stage drug discovery. While numerous
machine learning methods exist for predicting ligand potency, their comparative efficacy …
machine learning methods exist for predicting ligand potency, their comparative efficacy …
PIGNet2: a versatile deep learning-based protein–ligand interaction prediction model for binding affinity scoring and virtual screening
Prediction of protein–ligand interactions (PLI) plays a crucial role in drug discovery as it
guides the identification and optimization of molecules that effectively bind to target proteins …
guides the identification and optimization of molecules that effectively bind to target proteins …
Ligand binding prediction using protein structure graphs and residual graph attention networks
Computational prediction of ligand–target interactions is a crucial part of modern drug
discovery as it helps to bypass high costs and labor demands of in vitro and in vivo …
discovery as it helps to bypass high costs and labor demands of in vitro and in vivo …
Multi-Level Contrastive Learning for Protein-Ligand Binding Residue Prediction
Protein-ligand interactions play a crucial role in various biological functions, with their
accurate prediction being pivotal for drug discovery and design processes. Traditional …
accurate prediction being pivotal for drug discovery and design processes. Traditional …
SPIN: SE (3)-Invariant Physics Informed Network for Binding Affinity Prediction
S Choi, S Seo, S Park - arXiv preprint arXiv:2407.11057, 2024 - arxiv.org
Accurate prediction of protein-ligand binding affinity is crucial for rapid and efficient drug
development. Recently, the importance of predicting binding affinity has led to increased …
development. Recently, the importance of predicting binding affinity has led to increased …
Enhancing Generalizability in Protein–Ligand Binding Affinity Prediction with Multimodal Contrastive Learning
D Luo, D Liu, X Qu, L Dong, B Wang - Journal of Chemical …, 2024 - ACS Publications
Improving the generalization ability of scoring functions remains a major challenge in protein–
ligand binding affinity prediction. Many machine learning methods are limited by their …
ligand binding affinity prediction. Many machine learning methods are limited by their …
GAABind: a geometry-aware attention-based network for accurate protein–ligand binding pose and binding affinity prediction
H Tan, Z Wang, G Hu - Briefings in Bioinformatics, 2024 - academic.oup.com
Protein–ligand interactions are increasingly profiled at high-throughput, playing a vital role
in lead compound discovery and drug optimization. Accurate prediction of binding pose and …
in lead compound discovery and drug optimization. Accurate prediction of binding pose and …
MGPLI: exploring multigranular representations for protein–ligand interaction prediction
Motivation The capability to predict the potential drug binding affinity against a protein target
has always been a fundamental challenge in silico drug discovery. The traditional …
has always been a fundamental challenge in silico drug discovery. The traditional …