Phylogroup-specific variation shapes the clustering of antimicrobial resistance genes and defence systems across regions of genome plasticity in Pseudomonas …

J Botelho, L Tüffers, J Fuss, F Buchholz, C Utpatel… - …, 2023 - thelancet.com
Background Pseudomonas aeruginosa is an opportunistic pathogen consisting of three
phylogroups (hereafter named A, B, and C). Here, we assessed phylogroup-specific …

Pseudomonas aeruginosa Pangenome: Core and Accessory Genes of a Highly Resourceful Opportunistic Pathogen

KZ Abram, SR Jun, Z Udaondo - Pseudomonas aeruginosa: Biology …, 2022 - Springer
In this chapter, we leverage a novel approach to assess the seamless population structure of
Pseudomonas aeruginosa, using the full repertoire of genomes sequenced to date …

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium

L Freschi, J Jeukens, I Kukavica-Ibrulj, B Boyle… - Frontiers in …, 2015 - frontiersin.org
The International Pseudomonas aeruginosa Consortium is sequencing over 1000 genomes
and building an analysis pipeline for the study of Pseudomonas genome evolution, antibiotic …

Single-Nucleotide Polymorphism-Based Genetic Diversity Analysis of Clinical Pseudomonas aeruginosa Isolates

U Muthukumarasamy, M Preusse… - Genome Biology and …, 2020 - academic.oup.com
Extensive use of next-generation sequencing has the potential to transform our knowledge
on how genomic variation within bacterial species impacts phenotypic versatility. Because …

Pangenome-wide and molecular evolution analyses of the Pseudomonas aeruginosa species

J Mosquera-Rendón, AM Rada-Bravo… - BMC genomics, 2016 - Springer
Background Drug treatments and vaccine designs against the opportunistic human
pathogen Pseudomonas aeruginosa have multiple issues, all associated with the diverse …

Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa

A Dötsch, F Klawonn, M Jarek, M Scharfe, H Blöcker… - BMC genomics, 2010 - Springer
Background The constant increase in development and spread of bacterial resistance to
antibiotics poses a serious threat to human health. New sequencing technologies are now …

Genomic complexity and plasticity ensure Pseudomonas success

KP Rumbaugh - FEMS Microbiology Letters, 2014 - academic.oup.com
The first Pseudomonas genome was sequenced in 2000, and at 6.3 million base pairs, it
was, at the time, the largest bacterial genome ever sequenced (Stover et al., 2000). Not …

The Pseudomonas aeruginosa Pan-Genome Provides New Insights on Its Population Structure, Horizontal Gene Transfer, and Pathogenicity

L Freschi, AT Vincent, J Jeukens… - Genome biology and …, 2019 - academic.oup.com
The huge increase in the availability of bacterial genomes led us to a point in which we can
investigate and query pan-genomes, for example, the full set of genes of a given bacterial …

Pseudomonas aeruginosa clinical and environmental isolates constitute a single population with high phenotypic diversity

MV Grosso-Becerra, C Santos-Medellín… - BMC genomics, 2014 - Springer
Background Pseudomonas aeruginosa is an opportunistic pathogen with a high incidence
of hospital infections that represents a threat to immune compromised patients. Genomic …

A large-scale whole-genome comparison shows that experimental evolution in response to antibiotics predicts changes in naturally evolved clinical Pseudomonas …

SJT Wardell, A Rehman, LW Martin… - Antimicrobial agents …, 2019 - Am Soc Microbiol
Pseudomonas aeruginosa is an opportunistic pathogen that causes a wide range of acute
and chronic infections. An increasing number of isolates have mutations that make them …