Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets
Background Single-cell RNA-seq (scRNA-seq) is emerging as a powerful tool to dissect cell-
specific effects of drug treatment in complex tissues. This application requires high levels of …
specific effects of drug treatment in complex tissues. This application requires high levels of …
Multiplexed single-cell RNA-seq via transient barcoding for simultaneous expression profiling of various drug perturbations
The development of high-throughput single-cell RNA sequencing (scRNA-seq) has enabled
access to information about gene expression in individual cells and insights into new …
access to information about gene expression in individual cells and insights into new …
Single-nucleus RNA sequencing of human pancreatic islets identifies novel gene sets and distinguishes β-cell subpopulations with dynamic transcriptome profiles
RB Kang, Y Li, C Rosselot, T Zhang, M Siddiq… - Genome Medicine, 2023 - Springer
Background Single-cell RNA sequencing (scRNA-seq) provides valuable insights into
human islet cell types and their corresponding stable gene expression profiles. However …
human islet cell types and their corresponding stable gene expression profiles. However …
bigSCale: an analytical framework for big-scale single-cell data
Single-cell RNA sequencing (scRNA-seq) has significantly deepened our insights into
complex tissues, with the latest techniques capable of processing tens of thousands of cells …
complex tissues, with the latest techniques capable of processing tens of thousands of cells …
Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists
X Zhu, TK Wolfgruber, A Tasato, C Arisdakessian… - Genome medicine, 2017 - Springer
Background Single-cell RNA sequencing (scRNA-Seq) is an increasingly popular platform
to study heterogeneity at the single-cell level. Computational methods to process scRNA …
to study heterogeneity at the single-cell level. Computational methods to process scRNA …
Integrating single-cell transcriptomic data across different conditions, technologies, and species
Computational single-cell RNA-seq (scRNA-seq) methods have been successfully applied
to experiments representing a single condition, technology, or species to discover and …
to experiments representing a single condition, technology, or species to discover and …
scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis
JJ Cai - 2020 - academic.oup.com
Motivation Single-cell RNA sequencing (scRNA-seq) technology has revolutionized the way
research is done in biomedical sciences. It provides an unprecedented level of resolution …
research is done in biomedical sciences. It provides an unprecedented level of resolution …
Profiling of single‐cell transcriptomes
Complex biological systems are composed of multiple cell types whose transcriptional
activity can vary due to differences in cell state, environmental stimulation, or intrinsic …
activity can vary due to differences in cell state, environmental stimulation, or intrinsic …
Case-control analysis of single-cell RNA-seq studies
Single-cell RNA-seq (scRNA-seq) assays are being increasingly utilized to investigate
specific hypotheses in both basic biology and clinically-applied studies. The design of most …
specific hypotheses in both basic biology and clinically-applied studies. The design of most …
ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data
V Gardeux, FPA David, A Shajkofci, PC Schwalie… - …, 2017 - academic.oup.com
Motivation Single-cell RNA-sequencing (scRNA-seq) allows whole transcriptome profiling of
thousands of individual cells, enabling the molecular exploration of tissues at the cellular …
thousands of individual cells, enabling the molecular exploration of tissues at the cellular …