Clinical potential of mass spectrometry-based proteogenomics

B Zhang, JR Whiteaker, AN Hoofnagle… - Nature Reviews …, 2019 - nature.com
Cancer genomics research aims to advance personalized oncology by finding and targeting
specific genetic alterations associated with cancers. In genome-driven oncology, treatments …

Recent advances in mass spectrometry based clinical proteomics: applications to cancer research

A Macklin, S Khan, T Kislinger - Clinical proteomics, 2020 - Springer
Cancer biomarkers have transformed current practices in the oncology clinic. Continued
discovery and validation are crucial for improving early diagnosis, risk stratification, and …

Cancer proteogenomics: current impact and future prospects

DR Mani, K Krug, B Zhang, S Satpathy… - Nature Reviews …, 2022 - nature.com
Genomic analyses in cancer have been enormously impactful, leading to the identification of
driver mutations and development of targeted therapies. But the functions of the vast majority …

The evolving role of mass spectrometry in cancer biomarker discovery

P Wang, JR Whiteaker, AG Paulovich - Cancer biology & therapy, 2009 - Taylor & Francis
Although the field of mass spectrometry-based proteomics is still in its infancy, recent
developments in targeted proteomic techniques have left the field poised to impact the …

Clinical applications of mass spectrometry‐based proteomics in cancer: Where are we?

EL Boys, J Liu, PJ Robinson, RR Reddel - Proteomics, 2023 - Wiley Online Library
Tumor tissue processing methodologies in combination with data‐independent acquisition
mass spectrometry (DIA‐MS) have emerged that can comprehensively analyze the …

Connecting genomic alterations to cancer biology with proteomics: the NCI Clinical Proteomic Tumor Analysis Consortium

MJ Ellis, M Gillette, SA Carr, AG Paulovich, RD Smith… - Cancer discovery, 2013 - AACR
The National Cancer Institute (NCI) Clinical Proteomic Tumor Analysis Consortium is
applying the latest generation of proteomic technologies to genomically annotated tumors …

Mass spectrometry for translational proteomics: progress and clinical implications

ES Baker, T Liu, VA Petyuk, KE Burnum-Johnson… - Genome medicine, 2012 - Springer
The utility of mass spectrometry (MS)-based proteomic analyses and their clinical
applications have been increasingly recognized over the past decade due to their high …

Proteomics-driven cancer biomarker discovery: looking to the future

RJ Simpson, OK Bernhard, DW Greening… - Current opinion in …, 2008 - Elsevier
Availability of a suite of biomarkers for early detection, stratification into distinct subtypes,
and monitoring progression or response to therapy promises significant improvements in …

Onco-proteogenomics: cancer proteomics joins forces with genomics

JA Alfaro, A Sinha, T Kislinger, PC Boutros - Nature methods, 2014 - nature.com
The complexities of tumor genomes are rapidly being uncovered, but how they are regulated
into functional proteomes remains poorly understood. Standard proteomics workflows use …

Proteomic contributions to personalized cancer care

JM Koomen, EB Haura, G Bepler, R Sutphen… - Molecular & Cellular …, 2008 - ASBMB
Cancer impacts each patient and family differently. Our current understanding of the disease
is primarily limited to clinical hallmarks of cancer, but many specific molecular mechanisms …