Targeted capture in evolutionary and ecological genomics

MR Jones, JM Good - Molecular ecology, 2016 - Wiley Online Library
The rapid expansion of next‐generation sequencing has yielded a powerful array of tools to
address fundamental biological questions at a scale that was inconceivable just a few years …

[HTML][HTML] Genotyping-by-sequencing in ecological and conservation genomics

SR Narum, CA Buerkle, JW Davey, MR Miller… - Molecular …, 2013 - ncbi.nlm.nih.gov
The fields of ecological and conservation genetics have developed greatly in recent
decades through the use of molecular markers to investigate organisms in their natural …

The future is now: Amplicon sequencing and sequence capture usher in the conservation genomics era

MH Meek, WA Larson - 2019 - Wiley Online Library
The genomics revolution has initiated a new era of population genetics where genome‐wide
data are frequently used to understand complex patterns of population structure and …

Sequencing breakthroughs for genomic ecology and evolutionary biology

ME Hudson - Molecular ecology resources, 2008 - Wiley Online Library
Techniques involving whole‐genome sequencing and whole‐population sequencing
(metagenomics) are beginning to revolutionize the study of ecology and evolution. This …

Identifying conserved genomic elements and designing universal bait sets to enrich them

BC Faircloth - Methods in Ecology and Evolution, 2017 - Wiley Online Library
Targeted enrichment of conserved genomic regions is a popular method for collecting large
amounts of sequence data from non‐model taxa for phylogenetic, phylogeographic and …

Targeted multiplex next‐generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics

BL Hancock‐Hanser, A Frey, MS Leslie… - Molecular Ecology …, 2013 - Wiley Online Library
Next‐generation sequencing (NGS) is emerging as an efficient and cost‐effective tool in
population genomic analyses of nonmodel organisms, allowing simultaneous resequencing …

Sequence capture using PCR‐generated probes: a cost‐effective method of targeted high‐throughput sequencing for nonmodel organisms

JV Peñalba, LL Smith, MA Tonione… - Molecular ecology …, 2014 - Wiley Online Library
Recent advances in high‐throughput sequencing library preparation and subgenomic
enrichment methods have opened new avenues for population genetics and phylogenetics …

Whole‐genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations

AP Fuentes‐Pardo, DE Ruzzante - Molecular ecology, 2017 - Wiley Online Library
Whole‐genome resequencing (WGR) is a powerful method for addressing fundamental
evolutionary biology questions that have not been fully resolved using traditional methods …

Harnessing genomics for evolutionary insights

A Rokas, P Abbot - Trends in Ecology & Evolution, 2009 - cell.com
Next-generation DNA sequencing technologies can generate unprecedented amounts of
genomic data, even for non-model organisms. Here we describe how these new …

Capturing protein-coding genes across highly divergent species

C Li, M Hofreiter, N Straube, S Corrigan… - Biotechniques, 2013 - Future Science
DNA hybridization capture combined with next generation sequencing can be used to
determine the sequences of hundreds of target genes across hundreds of individuals in a …