Decoding the protein–ligand interactions using parallel graph neural networks
Protein–ligand interactions (PLIs) are essential for biochemical functionality and their
identification is crucial for estimating biophysical properties for rational therapeutic design …
identification is crucial for estimating biophysical properties for rational therapeutic design …
Ssnet: A deep learning approach for protein-ligand interaction prediction
Computational prediction of Protein-Ligand Interaction (PLI) is an important step in the
modern drug discovery pipeline as it mitigates the cost, time, and resources required to …
modern drug discovery pipeline as it mitigates the cost, time, and resources required to …
Geometric interaction graph neural network for predicting protein–ligand binding affinities from 3d structures (gign)
Predicting protein–ligand binding affinities (PLAs) is a core problem in drug discovery.
Recent advances have shown great potential in applying machine learning (ML) for PLA …
Recent advances have shown great potential in applying machine learning (ML) for PLA …
Struct2Graph: a graph attention network for structure based predictions of protein–protein interactions
Background Development of new methods for analysis of protein–protein interactions (PPIs)
at molecular and nanometer scales gives insights into intracellular signaling pathways and …
at molecular and nanometer scales gives insights into intracellular signaling pathways and …
Ligand binding prediction using protein structure graphs and residual graph attention networks
Computational prediction of ligand–target interactions is a crucial part of modern drug
discovery as it helps to bypass high costs and labor demands of in vitro and in vivo …
discovery as it helps to bypass high costs and labor demands of in vitro and in vivo …
Multiphysical graph neural network (MP-GNN) for COVID-19 drug design
Graph neural networks (GNNs) are the most promising deep learning models that can
revolutionize non-Euclidean data analysis. However, their full potential is severely curtailed …
revolutionize non-Euclidean data analysis. However, their full potential is severely curtailed …
Interactiongraphnet: A novel and efficient deep graph representation learning framework for accurate protein–ligand interaction predictions
Accurate quantification of protein–ligand interactions remains a key challenge to structure-
based drug design. However, traditional machine learning (ML)-based methods based on …
based drug design. However, traditional machine learning (ML)-based methods based on …
Tankbind: Trigonometry-aware neural networks for drug-protein binding structure prediction
Illuminating interactions between proteins and small drug molecules is a long-standing
challenge in the field of drug discovery. Despite the importance of understanding these …
challenge in the field of drug discovery. Despite the importance of understanding these …
Multi-PLI: interpretable multi‐task deep learning model for unifying protein–ligand interaction datasets
The assessment of protein–ligand interactions is critical at early stage of drug discovery.
Computational approaches for efficiently predicting such interactions facilitate drug …
Computational approaches for efficiently predicting such interactions facilitate drug …
[HTML][HTML] MM-StackEns: A new deep multimodal stacked generalization approach for protein–protein interaction prediction
Accurate in-silico identification of protein–protein interactions (PPIs) is a long-standing
problem in biology, with important implications in protein function prediction and drug …
problem in biology, with important implications in protein function prediction and drug …