shinyÉPICo: a graphical pipeline to analyze Illumina DNA methylation arrays
O Morante-Palacios, E Ballestar - Bioinformatics, 2021 - academic.oup.com
… interactive and graphical tools for DNA methylation array analysis. For example, shinyMethyl
can be used to visualize quality control … in PDF format, the R objects of the analysis and a …
can be used to visualize quality control … in PDF format, the R objects of the analysis and a …
DNA Methylation: Methods and Analyses
TJ Gorrie-Stone - 2019 - repository.essex.ac.uk
… of quality control, the first using the shinyMethyl R package … MethylAid and shinyMethyl both
offer interactive GUIs for the … of the BeadStudio software of Illumina) and wateRmelon (the …
offer interactive GUIs for the … of the BeadStudio software of Illumina) and wateRmelon (the …
methylR: a graphical interface for comprehensive DNA methylation array data analysis
… is designed for Illumina DNA methylation array data analysis, … through Bioconductor that
perform quality control, variance … 2015) R packages to provide clear and interactive graphical …
perform quality control, variance … 2015) R packages to provide clear and interactive graphical …
[PDF][PDF] MethylAid: Visual and Interactive qual-ity control of Illumina Human DNA Methylation array data
M van Iterson, D Cats, B Heijmans - 2019 - s3.jcloud.sjtu.edu.cn
… shinyMethyl allows quality control assessment and interactive exploration of 450k array data
in … After summarization the data can be loaded into R and passed to visualize for interactive …
in … After summarization the data can be loaded into R and passed to visualize for interactive …
[PDF][PDF] Statistical methods for epigenetic data and structural magnetic resonance imaging
JP Fortin - 2016 - jscholarship.library.jhu.edu
… Finally, we present shinyMethyl, a Bioconductor package for interactive quality control of
DNA methylation data from the Illumina 450k array. … in all datasets passed our quality control. …
DNA methylation data from the Illumina 450k array. … in all datasets passed our quality control. …
Identifying mislabeled and contaminated DNA methylation microarray data: an extended quality control toolset with examples from GEO
JA Heiss, AC Just - Clinical epigenetics, 2018 - Springer
… We describe a set of quality checks for the popular Illumina 450K and EPIC microarrays to
… probes visually are provided in the minfi [9], RnBeads [10] and shinyMethyl [11] R packages. …
… probes visually are provided in the minfi [9], RnBeads [10] and shinyMethyl [11] R packages. …
[PDF][PDF] DNA methylation data
C Ruiz, JR González, M Bustamante - projecthelix.eu
… was assessed with the Infinium HumanMethylation450 beadchip from Illumina, following …
quality control checks were performed. First, we checked sex consistency using the shinyMethyl …
quality control checks were performed. First, we checked sex consistency using the shinyMethyl …
Meffil: efficient normalisation and analysis of very large DNA methylation samples
… R package designed to quality control, normalize and perform epigenome-wide association
studies (EWAS) efficiently on large samples of Illumina … more detailed interaction with data …
studies (EWAS) efficiently on large samples of Illumina … more detailed interaction with data …
[PDF][PDF] MethylAid: Visual and Interactive quality control of Illumina Human DNA Methylation array data
… shinyMethyl allows quality control assessment and interactive exploration of 450k array data
in … After summarization the data can be loaded into R and passed to visualize for interactive …
in … After summarization the data can be loaded into R and passed to visualize for interactive …
Novel DNA methylation signatures of tobacco smoking with trans-ethnic effects
… novel blood methylation smoking signals on the Illumina … DNA methylation quality control
measures included multiple … The shinyMethyl R package [13] was used to visualize the raw …
measures included multiple … The shinyMethyl R package [13] was used to visualize the raw …