The mutational landscape of the SCAN‐B real‐world primary breast cancer transcriptome

C Brueffer, S Gladchuk, C Winter… - EMBO molecular …, 2020 - embopress.org
… from RNA sequencing (RNA-seq) data. The mutational landscape of 3,217 primary breast
cancer … Large-scale projects such as TCGA and SCAN-B generate vast amounts of data, but …

Somatic mutation landscapes at single-molecule resolution

F Abascal, LMR Harvey, E Mitchell, ARJ Lawson… - Nature, 2021 - nature.com
… samples, enabling studies of somatic mutagenesis in large-scale cohorts, across genetic …
inferred from the sequencing data (using Piccard’s software). This analysis revealed that, for …

RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues

K Yizhak, F Aguet, J Kim, JM Hess, K Kübler, J Grimsby… - Science, 2019 - science.org
Large-scale studies analyzing DNA sequencing data are needed to better distinguish … the
disease while considering the nonpathogenic landscape of mutations. Such findings may have …

[HTML][HTML] Characterization of the genomic landscape and actionable mutations in Chinese breast cancers by clinical sequencing

GT Lang, YZ Jiang, JX Shi, F Yang, XG Li… - Nature …, 2020 - nature.com
large-scale prospective clinical sequencing program using the Fudan-BC panel, and
comprehensively analyze the clinical and genomic … A pairwise analysis revealed that the PI3K and …

The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing

RE Rodin, Y Dou, M Kwon, MA Sherman… - Nature …, 2021 - nature.com
… enrichment of mutations in coding and putative regulatory regions. Our analysis reveals that
the first cell division after fertilization produces ~3.4 mutations, followed by 2–3 mutations in …

Mutational landscape of the transcriptome offers putative targets for immunotherapy of myeloproliferative neoplasms

F Schischlik, R Jäger, F Rosebrock… - Blood, The Journal …, 2019 - ashpublications.org
… Using whole-transcriptome sequencing, we analyzed RNA from granulocytes of 104 … for
which mutations in the splicing machinery have been described. This analysis revealed that the 3…

[HTML][HTML] Landscape of transcriptome variations uncovering known and novel driver events in colorectal carcinoma

G Pira, P Uva, AM Scanu, PC Rocca, L Murgia… - Scientific Reports, 2020 - nature.com
… -neoplastic tissues were subjected to high-throughput transcriptome sequencing. … mutations
in neoplastic cells, but large-scale mutation profiling is not available for each tumour. RNA-…

[HTML][HTML] Characterization of the genomic landscape in large-scale Chinese patients with pancreatic cancer

X Zhang, T Mao, B Zhang, H Xu, J Cui, F Jiao… - …, 2022 - thelancet.com
… This study comprehensively reported the real-world genomic characteristics of large-scale
patients with pancreatic cancer by clinical sequencing from China which is conducive to …

[HTML][HTML] Single-cell genomic and transcriptomic landscapes of primary and metastatic colorectal cancer tumors

R Wang, J Li, X Zhou, Y Mao, W Wang, S Gao… - Genome Medicine, 2022 - Springer
… The high-precision single-cell RNA sequencing protocol we used was a modified STRT-…
before treatment, cells basically do not experience large-scale cell death, so the possibility of …

[HTML][HTML] Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers

N Shukla, MF Levine, G Gundem, D Domenico… - Nature …, 2022 - nature.com
… workflows to process large-scale data within clinically … cWGTS analyses revealed a profoundly
rearranged genome … patterns demonstrating that cancer genomic landscape can be fully …