… We generated a second set of SVs for each trio using the haplotype-resolved Phased-SV
and MS-PAC assemblies generated from the PB long-read sequencing data (Methods: Unified …

… Microhaplotypes are generally more informative per locus than tri-allelic SNPs as most,
although not all, of them have more than three common haplotypes. The equivalent average …

… 2 and 7 SNPs overlapping with our rare haplotypes c2592 and c863, respectively (Table 5).
Because of the large number of the asthma-associated SNPs … We used the map files for our …

… SNPs selected as a subset from [25], 3348 SNPs dispersed over the whole chromosome
15 and a dense 10000 SNP … /haplotypes (instances) and columns are positions/SNPs (features)…

… , LD-based genetic map for the Japanese population from 10 million SNPs of 150 deeply
sequenced unrelated individuals; genotype QC and haplotype phasing were performed by …

… from multiple individuals resulted in a mosaic of haplotypes. As a result, several GRC …
a complete human haplotype, it does not capture the full diversity of human genetic variation…

… The current study’s primary strength is that we show the ability of SNHap-RHM to incorporate
SNP and haplotype information jointly to map genomic regions that affect complex traits. …

… After using GATK hard filter and population genetic parameters, 2.3 million truths set of
SNPs and 1.4 million InDels that were identified in this study, will provide valuable resources to …

… four haplotypes of its autotetraploid genome remained an unsolved challenge. Here, we
report the 3.1 Gb haplotype-… a, SNP density as observed in pairwise comparisons between the …

… ), the large-scale LD patterns of the human genome play … of m 2 SNP pairs, given a sample
of n individuals and m SNPs ( n ≪ … haplotype frequencies, with D l 1 l 2 = p l 1 l 2 - p l 1 p l 2 . …