Modern kinetics and mechanism of protein folding: A retrospective
WA Eaton - The Journal of Physical Chemistry B, 2021 - ACS Publications
… The concept of internal friction in protein folding kinetics was motivated by our work on the
conformational changes in myoglobin following photodissociation of the carbon monoxide …
conformational changes in myoglobin following photodissociation of the carbon monoxide …
The protein folding problem: the role of theory
… astronomically large conformational spaces of non-native states of proteins, the equilibrium
structures they attained, and the kinetics of searching those spaces and finding native states. …
structures they attained, and the kinetics of searching those spaces and finding native states. …
[HTML][HTML] Downhill, ultrafast and fast folding proteins revised
M Banach, K Stapor, L Konieczny, P Fabian… - International Journal of …, 2020 - mdpi.com
… protein folding problem differentiates the protein folding process with respect to the duration
of this process. The current structure … with more complex kinetics. The low RD value for the …
of this process. The current structure … with more complex kinetics. The low RD value for the …
Protein structure optimization using improved simulated annealing algorithm on a three-dimensional AB off-lattice model
L Zhang, H Ma, W Qian, H Li - Computational Biology and Chemistry, 2020 - Elsevier
… algorithm for protein structure optimization based on a three-dimensional AB off-lattice model.
… In this section, comprehensive simulations for protein folding structure were carried out on …
… In this section, comprehensive simulations for protein folding structure were carried out on …
Protein folding from heterogeneous unfolded state revealed by time-resolved X-ray solution scattering
… Protein undergoes a folding pathway to find a three-dimensional structure that expresses its
… , which can potentially alter the kinetic behavior in the protein folding due to the possibility of …
… , which can potentially alter the kinetic behavior in the protein folding due to the possibility of …
Ultrafast folding kinetics of WW domains reveal how the amino acid sequence determines the speed limit to protein folding
M Szczepaniak, M Iglesias-Bexiga… - Proceedings of the …, 2019 - National Acad Sciences
… is universal or depends on the protein’s chemical properties. We apply ultrafast kinetic
methods to investigate five proteins that share the simplest all-β fold but have different amino acid …
methods to investigate five proteins that share the simplest all-β fold but have different amino acid …
Structure folding of RNA kissing complexes in salt solutions: predicting 3D structure, stability, and folding pathway
L Jin, YL Tan, Y Wu, X Wang, YZ Shi, ZJ Tan - RNA, 2019 - rnajournal.cshlp.org
… -grained model with an implicit structure-based electrostatic potential to predict three-dimensional
(3D) structures … , our model shows great reliability in predicting 3D structures from their …
(3D) structures … , our model shows great reliability in predicting 3D structures from their …
Protein folding problem: enigma, paradox, solution
… The ability of protein chains to spontaneously form their three-dimensional structures is a …
of protein folding kinetics, including folding landscapes and funnels, free energy barriers at the …
of protein folding kinetics, including folding landscapes and funnels, free energy barriers at the …
[图书][B] Protein folding: An introduction
CM Gomes, PFN Faísca, CM Gomes, PFN Faísca - 2019 - Springer
… Proteins fold into a diversity of three-dimensional structures with diverse topologies and
well-defined structural … the thermodynamic and kinetic grounds of the folding process, but for now…
well-defined structural … the thermodynamic and kinetic grounds of the folding process, but for now…
[HTML][HTML] Is protein folding a thermodynamically unfavorable, active, energy-dependent process?
I Sorokina, AR Mushegian, EV Koonin - International journal of molecular …, 2022 - mdpi.com
… models can be formulated, in general terms, as thermodynamic vs. kinetic control of protein
folding. … G among the kinetically accessible structures. However, this approach to the study of …
folding. … G among the kinetically accessible structures. However, this approach to the study of …