APID database: redefining protein–protein interaction experimental evidences and binary interactomes
… is high, especially in the case of human and yeast (over 90%). The generation and … PPIs
that these two resources have in common. This analysis reveals several important observations: …
that these two resources have in common. This analysis reveals several important observations: …
A survey on computational models for predicting protein–protein interactions
… data and the other is integrated models that consider the biological information of proteins
extracted from different sources. … a theoretical and systematic analysis on how to perform the …
extracted from different sources. … a theoretical and systematic analysis on how to perform the …
Reliable identification of protein-protein interactions by crosslinking mass spectrometry
… Source data are provided as a Source Data file. c Schematic … fraction may be crosslinked
in this analysis. In contrast, … PPI that includes a human or yeast protein is false. According to …
in this analysis. In contrast, … PPI that includes a human or yeast protein is false. According to …
Discovering cellular protein‐protein interactions: Technological strategies and opportunities
K Titeca, I Lemmens, J Tavernier… - Mass spectrometry …, 2019 - Wiley Online Library
… ,3, 4 comprehensive analysis is challenging but central to our … On the one hand, iMYTH is
useful for original yeast proteins with … Another source of potential elimination of false positives …
useful for original yeast proteins with … Another source of potential elimination of false positives …
Protein–protein interaction sites prediction by ensemble random forests with synthetic minority oversampling technique
… sequence information of protein than the feature vectors obtained from the … different feature
extraction methods on the results, the robustness of feature extraction algorithms was derived …
extraction methods on the results, the robustness of feature extraction algorithms was derived …
Comprehensive characterization of protein–protein interactions perturbed by disease mutations
… interaction perturbations caused by somatic mutations may contribute to tumorigenesis.
Following this analysis, … were then extracted, purified and transformed into Y8930 yeast strain for …
Following this analysis, … were then extracted, purified and transformed into Y8930 yeast strain for …
Predicting protein-protein interactions from matrix-based protein sequence using convolution neural network and feature-selective rotation forest
L Wang, HF Wang, SR Liu, X Yan, KJ Song - Scientific reports, 2019 - nature.com
… horizontal comparison that the results obtained by our model … than the other methods, but
the results obtained on the Yeast … two-hybrid analysis to explore the yeast protein interactome. …
the results obtained on the Yeast … two-hybrid analysis to explore the yeast protein interactome. …
BIPSPI: a method for the prediction of partner-specific protein–protein interfaces
… To avoid any effect or artefact due overtraining, we analyzed the scores obtained in the
leave-one-out cross-validation computed on DBv5 and DImS (see Section 3.2). Then, for each …
leave-one-out cross-validation computed on DBv5 and DImS (see Section 3.2). Then, for each …
Yeast two‐hybrid assay to identify interacting proteins
A Paiano, A Margiotta, M De Luca… - … protocols in protein …, 2019 - Wiley Online Library
… the yeast clones isolated from the interaction screening or on the yeast colonies obtained
after … These approaches allow the identification and analysis of different types of interactions, …
after … These approaches allow the identification and analysis of different types of interactions, …
IID 2018 update: context-specific physical protein–protein interactions in human, model organisms and domesticated species
M Kotlyar, C Pastrello, Z Malik… - Nucleic acids research, 2019 - academic.oup.com
… interactions were available only for human and yeast. … types of network analysis: topology
analysis to identify important … interaction sources. It specifies context by using ontologies and …
analysis to identify important … interaction sources. It specifies context by using ontologies and …