Systems biology of deregulated splicing in cancer. A pan-cancer analysis of dysfunctional splicing machinery and alternative splicing events.

L Castillon - 2021 - odr.chalmers.se
… arise from a single cell, which is known as the monoclonal origin of tumors. However, there
… has been studied using RNA-sequencing, which enables transcriptome-wide profiling of the …

[图书][B] Genomic characterisation of Alzheimer's disease risk genes using long-read sequencing

SK Leung - 2022 - search.proquest.com
Transcriptome-wide … 2,800 single cells, identifying thousands of cell-speci c novel isoforms
and di erential isoform usage between cell lines for genes enriched in mRNA splicing and cell

Comprehensive bioinformatic analysis identified m6A methylation as an important regulator in mediating immune response during idiopathic pulmonary arterial …

N Liu, Y Zeng, T Huang, W Zuo, Y Xiao, B Li, Z Xiao… - 2020 - researchsquare.com
Brie y, m6A RNA immunoprecipitation was performed with … Su et al. rstly identi ed the
transcriptome-wide map of m6A … quantitatively compared transcriptome-wide changes between …

RNA alternative splicing prediction with discrete compositional energy network

A Chan, A Korsakova, YS Ong, FR Winnerdy… - Proceedings of the …, 2021 - dl.acm.org
… Since a particular splice junction may appear in more than one mRNA isoform, we design
DCEN to be invariant to the splice junctions. In the following § 5.1, we discuss the key …

Comprehensive Analysis of Differences of N6-Methyladenosine of Lncrnas Between Atrazine-Inducedand Normal Xenopus Laevis Testis

X Qi, X Geng, J Zhang, L Li, Q Jia, B Qu, Q Guo, C Bo… - 2021 - researchsquare.com
… can affect mRNA transcription, splicing, translation and stability [12… Brie y, fragmented RNA
was incubated in buffer and the … laevis, we examined the transcriptome-wide m6A modi cation …

mRNAs encoding neurodevelopmental regulators have equal m6A stoichiometry in Drosophila neuroblasts and neurons

J Sami, R Spitale, M Cleary - 2022 - researchsquare.com
Brie y, this approach uses targeted expression of a cytosine … of each are heavily biased
toward one cell type or the other and … targets, we also obtained transcriptome-wide mRNA decay …

[图书][B] Computational methods to elucidate post-transcriptional gene regulation using high-throughput sequencing data

Z Zhang - 2019 - search.proquest.com
… (RNA-seq) analysis of alternative splicing is its reliance on high … CLIP-seq analysis of AGO2
allows transcriptome-wide … inclusion/skipping levels in bulk tissues or single cells (8-11), we …

CDR1as related miRNA-mRNA networks in differentiating goat skeletal muscle satellite cells

B Kyei, L Li, L Yang, S Zhan, J Li, Y Chen, X Zhang… - 2020 - researchsquare.com
… , and has retarded the transcriptome-wide discovery of miRNAs … work through regulating
alternative splicing or transcriptional … Brie y, small RNAs were reversed transcribed and ampli ed …

[图书][B] mRNA Splicing-Mediated Gene Expression Regulation in Innate Immunity

L Frankiw - 2019 - search.proquest.com
one frequently used unproductive splicing event in oligoadenylate synthetase 1g (Oas1g),
an important murine anti-viral response factor, and show that removal of the alternative splice

[PDF][PDF] cerebra: A tool for fast and accurate summarizing of variant calling format (VCF) files

L Harris, R Vanheusden, O Botvinnik… - Journal of Open Source …, 2020 - joss.theoj.org
A single “typo” in the genome can have profound consequences on an organism’s biology.
Identifying the protein changes that accompany these genomic typos is a fundamental …