Understanding conformational entropy in small molecules
… group counts, N SG , to count the number of rotatable bonds … proposed descriptor, ring
flexibility, may not fully capture the … the applicability of the model beyond 300 K to more general …
flexibility, may not fully capture the … the applicability of the model beyond 300 K to more general …
Can small drugs predict the intrinsic aqueous solubility of 'beyond Rule of 5'big drugs?
A Avdeef, M Kansy - ADMET and DMPK, 2020 - hrcak.srce.hr
… number of rotatable bonds, which suggests that flexibility may … acceptor count increases,
but not so much the donor count. … search for 3D-based descriptors arising from ‘conformational …
but not so much the donor count. … search for 3D-based descriptors arising from ‘conformational …
Solution conformations shed light on PROTAC cell permeability
Y Atilaw, V Poongavanam… - ACS Medicinal …, 2020 - ACS Publications
… descriptors … rotatable bonds place 1 into chemical space far beyond the rule of 5. As the
calculated properties of 1 are representative for reported VHL based PROTACs that have flexible…
calculated properties of 1 are representative for reported VHL based PROTACs that have flexible…
Design principles for balancing lipophilicity and permeability in beyond rule of 5 space
H Möbitz - ChemMedChem, 2024 - Wiley Online Library
… , and high number of rotatable bonds typical for bRo5 drugs. … and 24 replicates of highly
flexible molecules also showed a strong … compartment to reduce lysosomal and cellular trapping. …
flexible molecules also showed a strong … compartment to reduce lysosomal and cellular trapping. …
Learning Over Molecular Conformer Ensembles: Datasets and Benchmarks
… and transition-metal catalysts, extending beyond the scope of common GNN benchmarks …
capture their properties. Hence, we only retain molecules with more than 5 rotatable bonds. …
capture their properties. Hence, we only retain molecules with more than 5 rotatable bonds. …
Multi-instance learning approach to the modeling of enantioselectivity of conformationally flexible organic catalysts
… beyond the training set (R 2 Test < 0), while the 3D single-… of the catalysts: the average
number of rotatable bonds for … that the 3D multiconformer model is able to capture relevant …
number of rotatable bonds for … that the 3D multiconformer model is able to capture relevant …
Beyond Rule of Five and PROTACs in Modern Drug Discovery: Polarity Reducers, Chameleonicity, and the Evolving Physicochemical Landscape
E Price, M Weinheimer, A Rivkin… - Journal of Medicinal …, 2024 - ACS Publications
… This parameter captures the ability of a compound to achieve … flexible but tended to have
poor absorption due to extreme AB-MPS scores (driven by their high rotatable bond counts as …
poor absorption due to extreme AB-MPS scores (driven by their high rotatable bond counts as …
The hapten rigidity improves antibody performances in immunoassay for rifamycins: Immunovalidation and molecular mechanism
Y Zhang, W Wu, Q Li, P Zhou, K Wen, J Shen… - Journal of Hazardous …, 2024 - Elsevier
… ) flexibility index that counts the number of conformers with an … molecular descriptors,
which considers rotatable bonds, 2D … of rotatable bonds, 2D topology, and 3D conformation, …
which considers rotatable bonds, 2D … of rotatable bonds, 2D topology, and 3D conformation, …
Geomol: Torsional geometric generation of molecular 3d conformer ensembles
… neural networks (MPNNs) to capture local and global graph … the graph size and number of
rotatable bonds, thus hindering … Use of 3d properties to characterize beyond rule-of-5 property …
rotatable bonds, thus hindering … Use of 3d properties to characterize beyond rule-of-5 property …
Permeability prediction in the beyond-Rule-of 5 chemical space: Focus on cyclic hexapeptides
V Digiesi, V de la Oliva Roque, M Vallaro… - European Journal of …, 2021 - Elsevier
… for cyclic compounds than the number of rotatable bonds [9]. … model with ΔG I and the flexibility
descriptor PHI (Eq. 1) log P … to find the states that best capture the dynamics of the system …
descriptor PHI (Eq. 1) log P … to find the states that best capture the dynamics of the system …