[HTML][HTML] Link-INVENT: generative linker design with reinforcement learning
… promising therapeutic applicability beyond traditional small … generally span 4.6 Å, capturing
the a priori knowledge from … ideas with variable ratios of rotatable bonds where we define ‘…
the a priori knowledge from … ideas with variable ratios of rotatable bonds where we define ‘…
Learning from the ligand: using ligand-based features to improve binding affinity prediction
… rotatable bonds of the ligand, we dropped this from the set of RDKit … capturing useful
information that is not present in the structure-based features, beyond the number of rotatable bonds …
information that is not present in the structure-based features, beyond the number of rotatable bonds …
Relationships between Changes in Guest Ion Properties and in the Host Framework Topology in Ionic Coordination Polymers
PN Zolotarev - Crystal Growth & Design, 2021 - ACS Publications
… lacks the ability to fully capture some properties (eg, TopoPSA descriptor) of molecules with
… of potentially rotatable bonds, can be better in reflecting the conformational flexibility of a …
… of potentially rotatable bonds, can be better in reflecting the conformational flexibility of a …
Quantitatively accounting for protein reorganization in computer-aided drug design
… to be flexible and adopt multiple distinct conformations, the … The more rigorous validation
is capturing the binding affinity … with a single harmonic restraint over each rotatable bond with …
is capturing the binding affinity … with a single harmonic restraint over each rotatable bond with …
Machine learning for drug discovery and beyond
W Qian - 2022 - ideals.illinois.edu
… Third, we propose a 3D full-atom diffusion framework for … conformations, it is even more difficult
to accurately capture the … large molecules with many rotatable bonds, we hypothesize that …
to accurately capture the … large molecules with many rotatable bonds, we hypothesize that …
Conformation search across multiple-level potential-energy surfaces (CSAMP): A strategy for accurate prediction of protein–ligand binding structures
L Wei, B Chi, Y Ren, L Rao, J Wu… - Journal of Chemical …, 2019 - ACS Publications
… rate is 79%, well beyond the reach of traditional molecular … ) are always able to capture more
Good Poses without relying … is a rotatable aromatic ring which is considerably flexible. All in …
Good Poses without relying … is a rotatable aromatic ring which is considerably flexible. All in …
Docking Flexible Cyclic Peptides with AutoDock CrankPep
… this decade, which is far beyond the size that traditional small-… with its number of rotatable
bonds. Hence, docking peptides … receptor interactions are actually captured by the docked …
bonds. Hence, docking peptides … receptor interactions are actually captured by the docked …
Computer-aided drug design
PV Bharatam - Drug discovery and development: From targets and …, 2021 - Springer
… but the scope of which is huge (beyond drug design). In this … center is suitable to capture
an oxygen molecule as well as … the torsional angles of all rotatable bonds; after each change, …
an oxygen molecule as well as … the torsional angles of all rotatable bonds; after each change, …
[HTML][HTML] Comparative analyses of medicinal chemistry and cheminformatics filters with accessible implementation in Konstanz information miner (KNIME)
S Kralj, M Jukič, U Bren - International journal of molecular sciences, 2022 - mdpi.com
… in their design but expand beyond the scope of classic drug-like … It supports the paradigm
that small compounds still capture … of rotatable bonds for the unfiltered and filtered libraries. The …
that small compounds still capture … of rotatable bonds for the unfiltered and filtered libraries. The …
Matching Simulations and Experiments of Conformationally Flexible Cyclic Peptides: Steps toward a Holistic View of Passive Membrane Permeability
… multiple rotatable bonds, resulting in a diverse conformational … of these descriptors is complex
enough to fully capture the … been observed using intramolecular hydrogen bond counts (…
enough to fully capture the … been observed using intramolecular hydrogen bond counts (…