Solvation free energies and adsorption energies at the metal/water interface from hybrid quantum-mechanical/molecular mechanics simulations
… δΔ h G is defined as the free energy change associated with the transformation depicted by
… , the hybrid QM/MM adsorption free energy is reduced (in absolute value) by around 20 kcal …
… , the hybrid QM/MM adsorption free energy is reduced (in absolute value) by around 20 kcal …
Ligand binding free energy and kinetics calculation in 2020
V Limongelli - Wiley Interdisciplinary Reviews: Computational …, 2020 - Wiley Online Library
… by methods computing the absolute LPB free energy. On the … via two distinct alchemical
transformation processes: process … the ligand binding free energy ΔF, is computed applying the …
transformation processes: process … the ligand binding free energy ΔF, is computed applying the …
[图书][B] Free energy relationships in organic and bio-organic chemistry
A Williams - 2019 - books.google.com
… Since that time the application of free energy relationships to … vibrations indicates that even
at absolute zero the exact positions … “a” in the free energy equation (Equation 2) compares the …
at absolute zero the exact positions … “a” in the free energy equation (Equation 2) compares the …
Validation of Free Energy Methods in AMBER
HC Tsai, Y Tao, TS Lee, KM Merz Jr… - Journal of chemical …, 2020 - ACS Publications
… legs of the alchemical transformation between molecules A and … in ligand–protein binding
applications, these errors can be … derived from absolute hydration free energy calculations with …
applications, these errors can be … derived from absolute hydration free energy calculations with …
Fitting quantum machine learning potentials to experimental free energy data: Predicting tautomer ratios in solution
… transformation. In this work, we present the application of this concept to calculate relative
free energies of … absolute error of ∼1 kcal mol −1 in the calculation of the investigated relative …
free energies of … absolute error of ∼1 kcal mol −1 in the calculation of the investigated relative …
Hydration free energies and solvation structures with molecular density functional theory in the hypernetted chain approximation
S Luukkonen, M Levesque, L Belloni… - The Journal of Chemical …, 2020 - pubs.aip.org
… Multiple approaches for solvation free energy calculation have … III, we apply MDFT to solutes
of increasing complexity: first … for the absolute solvation free energies ΔG and the relative …
of increasing complexity: first … for the absolute solvation free energies ΔG and the relative …
Using AMBER18 for relative free energy calculations
… TI computes the free energy change of this transformation by … in the protein matrix and in
solution. Therefore, TI simulations for … Moreover, in our current work, we did not apply replica …
solution. Therefore, TI simulations for … Moreover, in our current work, we did not apply replica …
Molecular Modeling of Ionic Liquids: Force‐Field Validation and Thermodynamic Perspective from Large‐Scale Fast‐Growth Solvation Free Energy Calculations
… in practical applications of ionic liquids derivatives, the solvation … transformation for each
solvation free energy calculation thus … Instead of comparing the absolute solvation free energies, …
solvation free energy calculation thus … Instead of comparing the absolute solvation free energies, …
Machine Learning Guided AQFEP: A Fast and Efficient Absolute Free Energy Perturbation Solution for Virtual Screening
… virtual screening campaigns using molecular docking, eg, refs (56,57) and RFEP, (14,31)
but to our knowledge, we disclose its application to the largest set of AFEP calculations to date. …
but to our knowledge, we disclose its application to the largest set of AFEP calculations to date. …
Implicit solvation methods for catalysis at electrified interfaces
… We review liquid solvation methodology from this specific application … While formally describing
the absolute solvation grand … review, a molecular solvation free energy is calculated as …
the absolute solvation grand … review, a molecular solvation free energy is calculated as …