[HTML][HTML] The EWAS Catalog: a database of epigenome-wide association studies

T Battram, P Yousefi, G Crawford, C Prince… - … open research, 2022 - ncbi.nlm.nih.gov
… The EWAS Catalog data extraction team continue to update … extracted from the European
Bioinformatics Institute database. … list of grants funding is available on the ALSPAC website (…

OMIM. org: leveraging knowledge across phenotype–gene relationships

JS Amberger, CA Bocchini, AF Scott… - … acids research, 2019 - academic.oup.com
Updates to OMIM can be found on the update list or followed … in specific genes, these
do not represent the totality of … from the Downloads link on every OMIM.org web page. The …

[HTML][HTML] gprofiler2--an R package for gene list functional enrichment analysis and namespace conversion toolset g: Profiler

L Kolberg, U Raudvere, I Kuzmin, J Vilo… - …, 2020 - ncbi.nlm.nih.gov
… as in the web tool without performing heavy computations and … R package into bioinformatics
analysis pipelines using … we update our database according to their update schedule (…

Updates to the symbol nomenclature for glycans guidelines

S Neelamegham, K Aoki-Kinoshita, E Bolton… - …, 2019 - academic.oup.com
… of researchers in the field (see SNFG Discussion Group list). Additionally, various software
programs for sketching glycans have been developed to support the implementation of this …

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

I Letunic, P Bork - Nucleic acids research, 2019 - academic.oup.com
… support throughout the user interface, and the ability to use any font from the Google Web
Fonts list. In addition, background color of any text label can be changed independently now. …

Pathway Commons 2019 Update: integration, analysis and exploration of pathway data

I Rodchenkov, O Babur, A Luna, BA Aksoy… - … acids research, 2020 - academic.oup.com
… along with link-outs to web apps and a ranked list of pathway … Interactions web app accessed
from the search page links to an … These results are retrieved by performing either cPath2 …

GenCLiP 3: mining human genes' functions and regulatory networks from PubMed based on co-occurrences and natural language processing

JH Wang, LF Zhao, HF Wang, YT Wen, KK Jiang… - 2020 - academic.oup.com
… We present a web server, GenCLiP 3, which is an updated … Identifying biological functions
and regulatory networks in a gene list … , are of considerable value to biomedical researchers. …

Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR

RD Olson, R Assaf, T Brettin, N Conrad… - … acids research, 2023 - academic.oup.com
… system on their own machines to do testing; for production, the … Clicking on this will provide
a list of possible tools and … In order to make these tools work for viruses, we will be updating

COG database update: focus on microbial diversity, model organisms, and widespread pathogens

MY Galperin, YI Wolf, KS Makarova… - … acids research, 2021 - academic.oup.com
… references and PDB links, where available; (… list of 1309 genomes included in the current
release is presented in the Supplementary Table S6 and is also available on the NCBI FTP site

The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform

JR Smith, GT Hayman, SJ Wang… - … acids research, 2020 - academic.oup.com
… can use to assess applicable models, and are updated on an … Clicking the toolbox icon or
link in a location that shows a list … with the larger research and bioinformatics community. As …