GraphQA: protein model quality assessment using graph convolutional networks
… Computational protein folding and design have recently received attention from the …
Several recent single-model QA works are based on deep learning: 3DCNN and Ornate adopt a …
Several recent single-model QA works are based on deep learning: 3DCNN and Ornate adopt a …
Deep convolutional neural networks for predicting the quality of single protein structural models
… novel deep convolutional networks to predict the local and global quality of a protein model
… are promising techniques for protein model quality assessment. In the near future, we will …
… are promising techniques for protein model quality assessment. In the near future, we will …
Protein model quality assessment using 3D oriented convolutional neural networks
… Many methods for protein folding QA have already been developed. The goal of these …
Specifically, convolutional neural networks (CNN, also sometimes referred to as deep learning) …
Specifically, convolutional neural networks (CNN, also sometimes referred to as deep learning) …
DeepUMQA: ultrafast shape recognition-based protein model quality assessment using deep learning
… based on 3D voxel atomic representation and 3D convolutional network. The input density
map … structure prediction, the dynamic combination of model quality assessment and folding …
map … structure prediction, the dynamic combination of model quality assessment and folding …
ProteinGCN: Protein model quality assessment using graph convolutional networks
… To tackle the problem of model quality estimation from deep learning perspective, one …
GCN to the protein model quality assessment problem. We show that, with 20-fold less learnable …
GCN to the protein model quality assessment problem. We show that, with 20-fold less learnable …
[HTML][HTML] Protein model accuracy estimation based on local structure quality assessment using 3D convolutional neural network
R Sato, T Ishida - PloS one, 2019 - journals.plos.org
… These deep learning methods often use low-level features such as RGB values of each …
-deep learning methods with high-level features. In such studies, convolutional neural networks (…
-deep learning methods with high-level features. In such studies, convolutional neural networks (…
[HTML][HTML] Machine learning approaches for quality assessment of protein structures
J Chen, SWI Siu - Biomolecules, 2020 - mdpi.com
… Fold recognition assumes that natural proteins fold in similar … deep learning method for
protein model quality assessment. … International Joint Conference on Neural Networks (IJCNN), …
protein model quality assessment. … International Joint Conference on Neural Networks (IJCNN), …
Distance-based protein folding powered by deep learning
J Xu - Proceedings of the National Academy of Sciences, 2019 - National Acad Sciences
… that by using a powerful deep learning technique, even with only a personal computer we
can predict new folds much more … This method also works well on membrane protein folding. …
can predict new folds much more … This method also works well on membrane protein folding. …
[HTML][HTML] Deep learning-based advances in protein structure prediction
… some insights into the key fold-determining residues in proteins. … until 2019 for quality
assessment of protein structures. Here, we … The Deep Learning network used in RaptorX to predict …
assessment of protein structures. Here, we … The Deep Learning network used in RaptorX to predict …
3D-equivariant graph neural networks for protein model quality assessment
… GNNRefine uses a graph convolution network with invariant features for protein model …
Under our testing environment, the deep learning model can handle proteins with length up to …
Under our testing environment, the deep learning model can handle proteins with length up to …