Ancient human genomes reveal a hidden history of strong selection in Eurasia
… for the signature of hard selective sweeps while controlling for … of a sweep arising from
SGV relative to a de novo mutation, … While further distinguishing between the two modes of …
SGV relative to a de novo mutation, … While further distinguishing between the two modes of …
Evolutionary dynamics in structured populations under strong population genetic forces
… subpopulation arrives through de novo mutation or via migration… less resolution to differentiate
among intermediate migration … a selective sweep, we explore an analytical model of F S T …
among intermediate migration … a selective sweep, we explore an analytical model of F S T …
[HTML][HTML] Comparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian rice
MN Ndjiondjop, N Alachiotis, P Pavlidis… - Theoretical and Applied …, 2019 - Springer
… The negative Tajima’s D values observed in the two cultivated rice species are indicative
of positive selection and reject the null hypothesis that all mutations are selectively neutral. …
of positive selection and reject the null hypothesis that all mutations are selectively neutral. …
A genome-wide Approximate Bayesian Computation approach suggests only limited numbers of soft sweeps in humans over the last 100,000 years
… hard sweeps and selective sweeps on standing variation. We … We then jointly estimated the
number of selective sweeps, … sweeps refer to sweeps on de novo advantageous mutations …
number of selective sweeps, … sweeps refer to sweeps on de novo advantageous mutations …
[HTML][HTML] … evolution of insecticide resistance in the malaria vector Anopheles funestus involves selective sweeps, copy number variations, gene conversion and …
GD Weedall, JM Riveron, J Hearn, H Irving… - PLoS …, 2020 - journals.plos.org
… patterns of genetic differentiation between An. funestus … of polymorphism reflects neutral
standing genetic diversity at … the spread of resistance mutations between African regions. A …
standing genetic diversity at … the spread of resistance mutations between African regions. A …
Soft sweeps predominate recent positive selection in bonobos (Pan paniscus) and chimpanzees (Pan troglodytes)
… standing genetic variation or recurrent de novo mutations. … or soft sweeps, as linked to recent
hard or soft selective sweeps, … However, as the difference between the most likely class and …
hard or soft selective sweeps, … However, as the difference between the most likely class and …
[HTML][HTML] Admixture has obscured signals of historical hard sweeps in humans
… the signature of fixed hard selective sweeps while controlling for … Although further distinguishing
between the two modes of … that selection from both de novo mutations and SGVs have …
between the two modes of … that selection from both de novo mutations and SGVs have …
Broad-scale variation in human genetic diversity levels is predicted by purifying selection on coding and non-coding elements
… Next, we examine whether incorporating selective sweeps … De novo structural mutation rates
and gamete- of- origin biases … A coalescent model for a sweep of a unique standing variant. …
and gamete- of- origin biases … A coalescent model for a sweep of a unique standing variant. …
Power of neutrality tests for detecting natural selection
T Tanaka, T Hayakawa… - G3: Genes, Genomes …, 2023 - academic.oup.com
… unclear whether we can distinguish between selection and … In this study, the power of tests
for detecting selective sweeps … the power for de novo mutation (SDN), 2 distinctive patterns …
for detecting selective sweeps … the power for de novo mutation (SDN), 2 distinctive patterns …
[HTML][HTML] Positive selection alone is sufficient for whole genome differentiation at the early stage of speciation process in the fall armyworm
K Nam, S Nhim, S Robin, A Bretaudeau, N Nègre… - BMC Evolutionary …, 2020 - Springer
… may occur readily through the accumulation of mutations by selection or drift. … outliers of
genetic differentiation as targets of selective sweeps (See box1 at [… De novo genome assembling …
genetic differentiation as targets of selective sweeps (See box1 at [… De novo genome assembling …