Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids
… of duplicate gene expression, including an overestimation of … subgenome) homoeologs in
the polyploid AD 1 transcriptomes, … In the following analysis, we binned homoeologous gene …
the polyploid AD 1 transcriptomes, … In the following analysis, we binned homoeologous gene …
[HTML][HTML] An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice
T Lallemand, M Leduc, C Landès, C Rizzon, E Lerat - Genes, 2020 - mdpi.com
… is characterized by a heavy loss of duplicated genes following … duplication can arise via
the homologous recombination … because pairs of homologous genes between these pairs of …
the homologous recombination … because pairs of homologous genes between these pairs of …
[HTML][HTML] Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants
… Integrated large-scale genome and transcriptome datasets … , and gene conversion underlying
duplicate gene evolution. In … new analysis supported that the number of duplicated gene …
duplicate gene evolution. In … new analysis supported that the number of duplicated gene …
[HTML][HTML] Genome Sequencing and Transcriptome Analysis Reveal Recent Species-Specific Gene Duplications in the Plastic Gilthead Sea Bream (Sparus aurata)
J Pérez-Sánchez, F Naya-Català, B Soriano… - Frontiers in Marine …, 2019 - frontiersin.org
… more than 55% of duplicated genes. The mobilome accounts … of homologous genes from
the phylogenomics analysis as … , the complete collection of gene evolutionary histories- across …
the phylogenomics analysis as … , the complete collection of gene evolutionary histories- across …
[HTML][HTML] The impact of tandem duplication on gene evolution in Solanaceae species
YL Huang, LK Zhang, K Zhang, SM Chen, JB Hu… - Journal of Integrative …, 2022 - Elsevier
… The analysis was used to investigate the phenomenon of … The retention of duplicated genes
does not occur randomly. … gene pair was homologous, it was classified into the gene cluster …
does not occur randomly. … gene pair was homologous, it was classified into the gene cluster …
Homoeologous exchanges occur through intragenic recombination generating novel transcripts and proteins in wheat and other polyploids
Z Zhang, X Gou, H Xun, Y Bian, X Ma… - Proceedings of the …, 2020 - National Acad Sciences
… duplication—is a major driving force in genome evolution and … This analysis has enabled
us to better understand the HE … of HR hotspots were found for homoeologous recombination. …
us to better understand the HE … of HR hotspots were found for homoeologous recombination. …
[HTML][HTML] Gene duplication in the sugarcane genome: a case study of allele interactions and evolutionary patterns in two genic regions
DA Sforça, S Vautrin, CB Cardoso-Silva… - Frontiers in plant …, 2019 - frontiersin.org
… Dotted lines connect the homologous genes in sugarcane at … be used as an indicator of a
duplicated gene, ie, a rate < 20 (… to CENP-C, and transcriptome analysis revealed the fusion of …
duplicated gene, ie, a rate < 20 (… to CENP-C, and transcriptome analysis revealed the fusion of …
[HTML][HTML] Re-sequencing and transcriptome analysis reveal rich DNA variations and differential expressions of fertility-related genes in neo-tetraploid rice
X Bei, MQ Shahid, J Wu, Z Chen, L Wang, X Liu - PLoS One, 2019 - journals.plos.org
… of dosage-regulated genes that evolved new biological functions, … used to eliminate the
PCR duplication. We used Genome … , which may reduce homologous recombination rates. It is …
PCR duplication. We used Genome … , which may reduce homologous recombination rates. It is …
[HTML][HTML] Parallel evolution of amphioxus and vertebrate small-scale gene duplications
… here an analysis of the gene duplication evolution of the … the analysis of functional
categories, where duplicated genes … We converted the Mikado transcriptome assembly and the …
categories, where duplicated genes … We converted the Mikado transcriptome assembly and the …
[HTML][HTML] Evolution of homeologous gene expression in polyploid wheat
… The transcriptome data are from a previously published study … mapping and expression
analysis, we kept only genes where 85% … of duplicated genes during polyploid wheat evolution. …
analysis, we kept only genes where 85% … of duplicated genes during polyploid wheat evolution. …