Whole-Genome Duplication Reshaped Adaptive Evolution in a Relict Plant Species, Cyclocarya Paliurus

Y Qu, X Shang, Z Zeng, Y Yu, G Bian… - Genomics …, 2023 - academic.oup.com
… paliurus, we performed a comparative transcriptome analysisgenes were enriched in
regulation of DNA recombination, … Our study identified two homologous genes in the CYP716A …

An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication

E Parey, A Louis, J Montfort, Y Guiguen… - Genome …, 2022 - genome.cshlp.org
genetic divergence of duplicated genes (cytological and … Localized homeologous
exchanges, in which sequences from … We focus our analysis at the Osteoglossiformes/Clupeocephala …

[HTML][HTML] Integrative gene duplication and genome-wide analysis as an approach to facilitate wheat reverse genetics: An example in the TaCIPK family

J Feng, Q Zhang, Y Wang, Y Guan, R Wang… - Journal of Advanced …, 2023 - Elsevier
… relied on homologous cloning and genome-wide analysis (GWA) of a given … duplicated
genes and loci with tandemly duplicated copies, allowing us to link TaCIPKs/TaCBLs evolution

[HTML][HTML] Open-Bud Duplicate Loci Are Identified as MML10s, Orthologs of MIXTA-Like Genes on Homologous Chromosomes of Allotetraploid Cotton

W Chen, J Yao, Y Li, S Zhu, Y Guo, S Fang… - Frontiers in Plant …, 2020 - frontiersin.org
transcriptome analysis showed that some of the MYB genes … for artificial selection and
evolution of a new function. The … of the ob genes, so no genetic recombination would occur during …

The role of gene duplication in the divergence of the sweet cherry

M Abdullah, IA Sabir, IH Shah, M Sajid, X Liu, S Jiu… - Plant Gene, 2022 - Elsevier
… and transcriptome datasets. The proximal and tandem mode of … all) was used to determine
all possible homologous geneanalysis to characterize the functionality of duplicated genes. …

[HTML][HTML] Functional roles of homologous recombination and non-homologous end joining in DNA damage response and microevolution in Cryptococcus neoformans

KW Jung, JH Jung, HY Park - Journal of Fungi, 2021 - mdpi.com
… Cells have evolved to contain sophisticated DNA repair systems to … Our previous
transcriptome analysis of the radiation-… Three independent biological experiments with duplicate

DNA methylation repatterning accompanying hybridization, whole genome doubling and homoeolog exchange in nascent segmental rice allotetraploids

N Li, C Xu, A Zhang, R Lv, X Meng, X Lin… - New …, 2019 - Wiley Online Library
duplication (WGD), is associated with emergent genetic and … allow homoeologous
chromosomes to pair and recombine during … One notable result of this analysis is that genomic …

[HTML][HTML] Complex analysis of retroposed genes' contribution to human genome, proteome and transcriptome

MR Kubiak, MW Szcześniak, I Makałowska - Genes, 2020 - mdpi.com
Gene duplication is a major driver of organismal evolution. … and novel genes resulting from
RNA-mediated duplication [13]; to the … Such non-allelic homologous recombination between a …

Evolution of the RNA N6-Methyladenosine Methylome Mediated by Genomic Duplication

Z Miao, T Zhang, Y Qi, J Song, Z Han, C Ma - Plant Physiology, 2020 - academic.oup.com
… Using the transcriptome-wide map of m 6 A generated from … Our analysis revealed that the
singleton-duplicate ratio of m 6 … the evolutionary consequences of five duplicate gene pairs …

Non-homologous chromosome pairing during meiosis in haploid Brassica rapa

J Yuan, G Shi, Y Yang, J Braynen, X Shi, X Wei, Z Hao… - Plant Cell Reports, 2021 - Springer
… genome duplication might reshape non-homologous pairing … rapa, and transcriptome
analysis was used to reveal the … family gene (Bra017457) related to homologous recombination