Human methylome variation across Infinium 450K data on the Gene Expression Omnibus

SK Maden, RF Thompson, KD Hansen… - NAR Genomics and …, 2021 - academic.oup.com
… to rigorously characterize technical and biological variation … (29) from 2018, which evaluated
metadata and sample quality … We conducted a cross-study analysis of methylation array …

Correlation of Infinium HumanMethylation450K and MethylationEPIC BeadChip arrays in cartilage

K Cheung, MJ Burgers, DA Young, S Cockell… - Epigenetics, 2020 - Taylor & Francis
Infinium probe technology and shares 452,453 common probes, but assays almost double
the number of CpG sites compared to the 450K … performed differential methylation analysis of …

Ewastools: Infinium Human Methylation BeadChip pipeline for population epigenetics integrated into Galaxy

K Murat, B Grüning, PW Poterlowicz, G Westgate… - …, 2020 - academic.oup.com
evaluation of DNA methylation at an individual CpG locus in the human genome based on
Illumina’s bead technology … is to make Infinium Human Methylation BeadChip analysis more …

mLiftOver: harmonizing data across infinium DNA methylation platforms

BH Chen, W Zhou - Bioinformatics, 2024 - academic.oup.com
… selection in Infinium technology reflects the evolving understanding of methylation biology
(Zhou … Next, we evaluated whether predictive models trained on HM450 data can be used on …

Reproducibility of the Infinium methylationEPIC BeadChip assay using low DNA amounts

SN Christiansen, JD Andersen, ML Kampmann, J Liu… - Epigenetics, 2022 - Taylor & Francis
… and unbiased evaluation of the kit. However, we are also well aware that the methylation
The setup optimized the analysis of the technical reproducibility. However, the setup may …

The Illumina Infinium methylation assay for genome-wide methylation analyses

K Nakabayashi - Epigenetics Methods, 2020 - Elsevier
… bead technology, is designed for highly multiplexed measurements of DNA methylation
at … This work represents a successful analysis of different types of HM BeadChip datasets (ie, …

Analysis and annotation of DNA methylation in two nonhuman primate species using the Infinium Human Methylation 450K and EPIC BeadChips

F Pichon, Y Shen, F Busato, SP Jochems… - …, 2021 - Taylor & Francis
… DNA methylation levels measured by the respective Infinium probes at three CpG positions
in each species showing a high correlation between the two orthogonal technologies and …

Low reliability of DNA methylation across Illumina Infinium platforms in cord blood: implications for replication studies and meta-analyses of prenatal exposures

EW Olstad, HME Nordeng, GK Sandve, R Lyle… - Clinical …, 2022 - Springer
… Recent studies have shown low concordance across 450 k and EPIC platforms in different
evaluation of technical aspects related to concordance of DNAm data across the Infinium

Evaluating DNA methylation age on the illumina MethylationEPIC bead chip

R Dhingra, LC Kwee, D Diaz-Sanchez, RB Devlin… - PloS one, 2019 - journals.plos.org
methylation data were used in this analysis: 1) data from the Illumina 450k array or the 27k
array (“full 450k … As DNA methylation array technology has progressed, researchers may wish …

Validation of the new EPIC DNA methylation microarray (900K EPIC v2) for high-throughput profiling of the human DNA methylome

A Noguera-Castells, CA García-Prieto… - Epigenetics, 2023 - Taylor & Francis
… DNA methylation microarray, the newly developed Infinium … 900K human methylation
microarray from technical, functional … First, we performed a principal component analysis (PCA), …