Analysis of direct repeats and spacers of CRISPR/Cas systems type IF in Brazilian clinical strains of Pseudomonas aeruginosa

ACO Luz, JMA da Silva, AM Rezende… - … Genetics and Genomics, 2019 - Springer
… strain studied, where we aimed to identify any patterns of spacer incorporation and similar
… Analysis of CRISPR arrays showed that CRISPR loci in P. aeruginosa display high plasticity

Achromobacter spp. genetic adaptation in cystic fibrosis

M Gabrielaite, FC Nielsen… - … genomics, 2021 - microbiologyresearch.org
… Altogether, our analysis revealed the principal genomic … Second, we aimed to identify pace
and patterns in genetic changes, … Within-host evolution of Pseudomonas aeruginosa reveals

[HTML][HTML] Diversity and prevalence of type VI secretion system effectors in clinical Pseudomonas aeruginosa isolates

LA Robinson, ACZ Collins, RA Murphy… - Frontiers in …, 2023 - frontiersin.org
… Here, we perform a comprehensive bioinformatic analysis of the … We identified an orphan
vgrG island in P. … aeruginosa strain PAO1 revealed the presence of genes encoding eight new …

[HTML][HTML] Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017

E Mastrorilli, S Petrin, M Orsini, A Longo, D Cozza… - BMC genomics, 2020 - Springer
… However, we here report the second case of an extended-… by high genomic diversity [9], thus
hindering the identification of … pseudogene number distribution among different serovars (p-…

Species-specific recruitment of transcription factors dictates toxin expression

J Trouillon, E Sentausa, M Ragno… - Nucleic acids …, 2020 - academic.oup.com
… major human pathogen Pseudomonas aeruginosa. Here, we … genes is an example of plasticity
of regulatory networks evolving … We showed that the operon is under direct control of the …

Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning‐enabled molecular diagnostics

…, A Oliver, G Cabot, A Kola, P Gastmeier… - EMBO molecular …, 2020 - embopress.org
id and accession based on PA14 reference genome gene family member or based on the
Comprehensive … a R504C mutation in ftsI likewise showed a strong ampC overexpression, …

[HTML][HTML] Genomics of Serratia marcescens isolates causing outbreaks in the same pediatric unit 47 years apart: position in an updated phylogeny of the species

C Saralegui, M Ponce-Alonso, B Pérez-Viso… - Frontiers in …, 2020 - frontiersin.org
… their closest reference genome identity. Contigs containing … SNP matrix showed the isolates
had a certain degree of genetic … In summary, phylogenetic analysis using large genome

[HTML][HTML] … -wide identification of myxobacterial predation genes and demonstration of formaldehyde secretion as a potentially predation-resistant trait of Pseudomonas …

D Sutton, PG Livingstone, E Furness… - Frontiers in …, 2019 - frontiersin.org
… to a power law distribution (the number of genes identified = … due to myxobacterial genomes
accumulating large numbers of … strains reveal unexpected diversity, with particular plasticity

[HTML][HTML] Herbicides Tolerance in a Pseudomonas Strain Is Associated With Metabolic Plasticity of Antioxidative Enzymes Regardless of Selection

AFS Rovida, G Costa, MI Santos, CR Silva… - Frontiers in …, 2021 - frontiersin.org
… was identified as belonging to the genus Pseudomonas, … The collection that was screened
in this work showed 67.2% of … Oxidative stress is a considerable impact caused by herbicides …

[HTML][HTML] Exoproteomics for Better Understanding Pseudomonas aeruginosa Virulence

S Sauvage, J Hardouin - Toxins, 2020 - mdpi.com
… its ability to survive in large environment range [1]. This universal … and physiological plasticity
to environmental changes [2]. … The proteins identified here revealed the different biological …