Reconstructing past vegetation communities using ancient DNA from lake sediments

L Parducci, K Nota, J Wood - … : Genome-scale analysis of ancient DNA, 2019 - Springer
… in high-throughput DNA sequencing technology and bioinformatics, it has become possible
to analyse the more informative nuclear genome of a larger number of ancientancient

Hybridization capture of larch (Larix Mill.) chloroplast genomes from sedimentary ancient DNA reveals past changes of Siberian forest

L Schulte, N Bernhardt… - Molecular Ecology …, 2021 - Wiley Online Library
… To evaluate the retrieval of Larix chloroplast genome sequences, alignments against a
reference were made with three data sets: the complete capture data set and the Larix-classified …

Ancient DNA analysis

L Orlando, R Allaby, P Skoglund… - Nature reviews …, 2021 - nature.com
… from thousands of ancient archaeological specimens, and the number of ancient biological
tissues amenable to genome sequencing is growing steadily. Ancient DNA fragments are …

Microbial diversity and composition of the Preah Vihear temple in Cambodia by high-throughput sequencing based on genomic DNA and RNA

H Meng, X Zhang, Y Katayama, Q Ge, JD Gu - International Biodeterioration …, 2020 - Elsevier
… The Prasat Preah Vihear temple is a unique and typical ancient temple for Hindu religion, …
is significantly higher by DNA sequencing result than that by RNA gene sequencing result in …

[HTML][HTML] The challenges of reconstructing tropical biodiversity with sedimentary ancient DNA: A 2200-year-long metagenomic record from Bwindi impenetrable forest …

R Dommain, M Andama, MM McDonough… - Frontiers in Ecology …, 2020 - frontiersin.org
… non-aquatic plants and wood for AMS radiocarbon … DNA sequences deriving from deeper,
earlier sediments suggest that at least a portion of these molecules are preserved ancient DNA

[HTML][HTML] Ancient DNA methods improve forensic DNA profiling of Korean War and World War II unknowns

EI Zavala, JT Thomas, K Sturk-Andreaggi… - Genes, 2022 - mdpi.com
… success rate with PCR and Sanger sequencing), the sample … which is high in copy number
relative to nuclear DNA. Additional … DNA profiles from historical remains, the ancient DNA field …

A strategy for developing high-resolution DNA barcodes for species discrimination of wood specimens using the complete chloroplast genome of three Pterocarpus …

L Jiao, Y Lu, T He, J Li, Y Yin - Planta, 2019 - Springer
… is a fragment of DNA sequence that has a sufficiently high mutation rate to … high-quality
DNA is not available and seriously degraded DNA is retrieved from old xylarium/museum wood

Microstratigraphic preservation of ancient faunal and hominin DNA in Pleistocene cave sediments

D Massilani, MW Morley, SM Mentzer… - Proceedings of the …, 2022 - National Acad Sciences
… This information may be crucial for associating DNA sequences with specific parts of a …
three times with tissue papers soaked in high performance liquid chromatography (HPLC)-grade …

A fast and efficient single-stranded genomic library preparation method optimized for ancient DNA

JD Kapp, RE Green, B Shapiro - Journal of Heredity, 2021 - academic.oup.com
… After extraction, ancient DNA molecules must be converted into sequencing libraries via
the addition of platform-specific DNA sequencing adapters at the ends of each molecule. Most …

Extraction of ancient DNA from plant remains

N Wales, L Kistler - Ancient DNA: Methods and protocols, 2019 - Springer
… plant genetics over Quaternary timescales using ancient DNA (aDNA)-based analyses. A
variety … require optimized DNA extraction approaches. Here, we describe a plant DNA isolation …