… pathogens, and also provide a description of software used for this task. In Chapter 12,
Goes-Neto performs an intensive literature review and metaanalysis of a customized database to …

… Within this review, we explain the most important issues related to pan-genome studies.
We also include a brief description of some selected bacterial pan-genomes. Finally, we …

… review, we present the main concepts and software used for the analysis of prokaryotic
pan-genomes. First, introduction … -to-date description of the most recent software for pan-genome …

… However, for a deeper review of computational strengths and weaknesses of different tools
… However, several plants species have been analyzed now with pan-genome methods and …

… Summary overview of qualitative features of pan-genome tools implemented in this study …
We observe that all tools produced graphs within the range of previous studies (Table 2). In …

… Metagenomics, in this sense, can be used as a tool to monitor, at an early stage, the
introduction of new pathogens in specific regions. It may have important applications for the …

… Pan-genome analysis serves as an outline to assess the genomic variability of all the data at
… Here, we review the evolution of plant-pathogen pan-genomics, its impact in understanding …

… This review reports the main analysis instruments provided by the current state of the art
tools for the discovery of pangenomic contents. Moreover, unlike previous works, the presented …

… At the time this PhD project started in May 2015, state-of-the-art pan-genome methods were
able to represent only tens of whole bacterial genomes without any possibility to be utilized …

… the introduction of the pan-genome concept has drawn the attention from singular reference
genomes toward the actual sequence diversity within … In this work, we present a review of …