… The most frequently described tools for data normalization are BATMAN and MEDME or
the MEDIPS pipeline that combines both [3, 43]. MeQA and MeDUSA are the pipelines that …

… of experimental protocols, and analysis procedures. In our review, besides exploring the cfDNA
methylation origin and analysis techniques, we … MEDME Provides both relative as well as …

… comparative analysis within a … novel method for DNA methylation analysis, namely,
methPLIER, which enables interdataset comparative analyses. methPLIER combines Pathway Level …

… a method named Co-Methylation with genomic CpG Background (CoMeBack) that estimates
DNA co-methylation, … CoMeBack outputs co-methylated regions (CMRs), spanning sets of …

… This sequence, a well-known regulatory consensus sequence indicating methylation level
in these two sites, plays a primary part in regulating the expression level of SERPINA1 in …

… We believe that the methods presented herein will help facilitate … DNA methylation is present
across tumor types with several clinically actionable subtypes harboring distinct methylation …

… mean DNA methylation level between normal and tumor samples ≥0.1. If the methylation
level … We used this method to define methylation status for the paired CpGs in 20 cancer types (…

… MEME model described in this paper, we also built a biased MEME model to reproduce the
Feltus et al. methodology … that are experimentally validated as methylation prone or resistant …

… For post-experimental analysis for restriction enzyme and enzyme-based approaches …
MEDME: An experimental and analytical methodology for the estimation of DNA methylation levels …

… of DNA methylation associated with X-… DNA methylation, we show that the silencing of
germline genes and endogenous retroviruses (ERVs) are conserved functions of DNA methylation …