The aim of this study was to assess whether possible metal contamination in the sediment of the nests of giant Amazon river turtle, Podocnemis expansa, could contaminate eggs and hatchlings, triggering genotoxic damage. Therefore, sediments of P. expansa nests from two sites in the Brazilian Amazon were evaluated, with the first being collected at Araguaia River and the second at Crixás-Açu River. Newly hatched offspring, eggs, and sediments were collected from the beaches of these two rivers and the quantification of metals (Al, Cd, Co, Cr, Cu, Fe, Mn, Pb, and Zn) was carried out by atomic absorption spectroscopy. All targeted metals were found in both sediment and P. expansa biological samples collected on the beaches presenting higher concentrations in the sediment of Crixás-Açu River. Metals found in the eggshells before nesting and in the egg contents were maternally transferred. Moreover, augmented concentration of metals led by metal transfer from the nests sediments were detected in the eggshells after nesting (ENH) and in the newly hatched offspring (H). Probably this metal relocation to the newly hatchlings augmented the frequency of micronuclei in their blood, presenting 15.25‰ in hatchling found in Crixás-Açu River beaches and 10‰ in newly hatched animals from Araguaia River beaches. These results indicate the occurrence of maternal transfer of metals (essential or not) to the eggs in testudines as well as a transference from the sediments to the nesting eggs, triggering genotoxic effects on the hatchlings.