Molecular dynamics simulation of small molecules interacting with biological membranes

C Martinotti, L Ruiz‐Perez, E Deplazes… - …, 2020 - Wiley Online Library
molecular simulations are used to study the interaction of … permeation coefficients of small
molecules is an active area of research and aids our understanding of physiological processes

Molecular dynamics simulations of membrane permeability

RM Venable, A Kramer, RW Pastor - Chemical reviews, 2019 - ACS Publications
… evaluation of permeability of lipid membranes from molecular dynamics (MD) simulation
primarily using … The permeability of membranes was being investigated before it was known that …

Intrinsic membrane permeability to small molecules

C Hannesschlaeger, A Horner, P Pohl - Chemical reviews, 2019 - ACS Publications
… immediate membrane vicinity of planar membranes, we analyzed the … bilayer may oppose
solute movement across the membrane. … by molecular dynamics simulations of cholesterol rich …

[HTML][HTML] Effect of Chemical Permeation Enhancers on Skin Permeability: In silico screening using Molecular Dynamics simulations

R Gupta, BS Dwadasi, B Rai, S Mitragotri - Scientific reports, 2019 - nature.com
… skin lipid matrix model is used in this study. The CG … Small molecules such as LEM and
ISP crossed the lipid layer significantly (as can be seen from the percentage molecule permeate

Permeation of nanoparticles across the intestinal lipid membrane: dependence on shape and surface chemistry studied through molecular simulations

R Gupta, Y Badhe, S Mitragotri, B Rai - Nanoscale, 2020 - pubs.rsc.org
… inside the lipid layer. The apical model lipid membrane and protocols used in this study can
… (CG) model of a multicomponent apical lipid membrane was built using molecular dynamics

[HTML][HTML] Molecular mechanism of the skin permeation enhancing effect of ethanol: A molecular dynamics study

R Gupta, Y Badhe, B Rai, S Mitragotri - RSC advances, 2020 - pubs.rsc.org
… , alteration of SC protein conformation and enhancement of the drug solubility in the SC
lipids. In this study, we performed molecular dynamics (MD) simulations of SC lipid bilayers

The contribution of lipid peroxidation to membrane permeability in electropermeabilization: A molecular dynamics study

L Rems, M Viano, MA Kasimova, D Miklavčič… - Bioelectrochemistry, 2019 - Elsevier
… Therefore, we calculated the permeability and conductance of lipid bilayer patches containing
hydroperoxide lipid derivatives using free energy calculations in MD. The next step that …

[HTML][HTML] Shedding light on the structural properties of lipid bilayers using molecular dynamics simulation: a review study

S Moradi, A Nowroozi, M Shahlaei - RSC advances, 2019 - pubs.rsc.org
… that small molecules can reduce the membrane thickness. The … not enough to enhance solute
permeation by reducing the span … that small solutes may move through the membrane by “…

[HTML][HTML] Membrane thickness, lipid phase and sterol type are determining factors in the permeability of membranes to small solutes

J Frallicciardi, J Melcr, P Siginou, SJ Marrink… - Nature …, 2022 - nature.com
molecular dynamics simulations, we performed a systematic analysis of the permeability of
a variety of small molecules through … as the plasma membranes of examined bacteria and …

[HTML][HTML] Development of a nanostructured lipid carrier (NLC) by a low-energy method, comparison of release kinetics and molecular dynamics simulation

AC Ortiz, O Yañez, E Salas-Huenuleo, JO Morales - Pharmaceutics, 2021 - mdpi.com
permeation kinetics may be related to the dialysis membrane … On the other hand, dynamic
molecular simulation studies … the incorporation of oil in a lipid formulation creates an imperfect …