Targeted and untargeted proteomics approaches in biomarker development

CA Sobsey, S Ibrahim, VR Richard, V Gaspar… - …, 2020 - Wiley Online Library
… genome, proteomics is now playing an increasing role in this search for … proteomic approaches
may be better suited for early stages of biomarker discovery, while targeted approaches

Application of proteomics in cancer: recent trends and approaches for biomarkers discovery

YW Kwon, HS Jo, S Bae, Y Seo, P Song, M Song… - Frontiers in …, 2021 - frontiersin.org
… current proteomics studies of brain cancer, in which proteomic … applications of proteomics
from the discovery of biomarkers to … in finding better approaches for the treatment of diseases. …

Proteomics approaches for biomarker and drug target discovery in ALS and FTD

TJ Hedl, R San Gil, F Cheng, SL Rayner… - Frontiers in …, 2019 - frontiersin.org
… to identify and quantitate peptides and proteins using two main approaches: database search
and de novo search. Database searching follows the “Exact Pattern-Matching rule,” which …

Cancer biomarker discovery and translation: proteomics and beyond

VA Hristova, DW Chan - Expert review of proteomics, 2019 - Taylor & Francis
… Protein arrays and antibody-based proteomic methods are targeted approaches for protein
… These methods are not optimal for biomarker discovery as they use a directed approach, …

Proteomic landscape of Alzheimer's Disease: novel insights into pathogenesis and biomarker discovery

B Bai, D Vanderwall, Y Li, X Wang, S Poudel… - Molecular …, 2021 - Springer
… ’s disease (AD). Here we review the advances and limitations in historic and recent AD
proteomicSearching PubMed’s literature repository with terms “Alzheimer’s or Alzheimer” and “…

Proteomics and informatics for understanding phases and identifying biomarkers in COVID-19 disease

AD Whetton, GW Preston, S Abubeker… - Journal of proteome …, 2020 - ACS Publications
… , so proteins tend to be identified by searching data against a spectral reference library. A
number of DIA methods are available for mass-spectrometry-based proteomics. (67) Some of …

Quantitative proteomic profiling of cerebrospinal fluid to identify candidate biomarkers for Alzheimer's disease

G Sathe, CH Na, S Renuse… - PROTEOMICS …, 2019 - Wiley Online Library
… with common contaminants) using SEQUEST search algorithm through Proteome Discoverer
platform (version 2.1, Thermo Scientific). The search parameters included a maximum of …

Deep undepleted human serum proteome profiling toward biomarker discovery for Alzheimer's disease

KK Dey, H Wang, M Niu, B Bai, X Wang, Y Li, JH Cho… - Clinical proteomics, 2019 - Springer
biomarkers in human disease. Comprehensive profiling of blood/plasma/serum proteome is
a … serum and apply the method toward biomarker discovery for Alzheimer’s disease (AD), as …

Proteome profiling in cerebrospinal fluid reveals novel biomarkers of Alzheimer's disease

JM Bader, PE Geyer, JB Müller, MT Strauss… - Molecular systems …, 2020 - embopress.org
… a comprehensive search for novel diagnostic biomarkers. A set of reliable protein biomarkers
… specific tests for early disease detection in at-risk segments of the population. Ideally, such …

Discovery and validation of clinical biomarkers of cancer: a review combining metabolomics and proteomics

A Srivastava, DJ Creek - Proteomics, 2019 - Wiley Online Library
… in order to find biomarkers of disease with both … proteomics analyses of clinical samples
has been explored widely for discovering novel biomarkers of cancer.9, 10 This approach