Redefining fundamental concepts of transcription initiation in bacteria

C Mejía-Almonte, SJW Busby, JT Wade… - Nature Reviews …, 2020 - nature.com
beyond the scope of this article; however, we outline the terminology to designate different
kinds of regulators. In the words … and that the term ‘transcription factor regulatory site’ (TFRS) …

Transcription regulators in Archaea: homologies and differences with bacterial regulators

L Lemmens, HR Maklad, I Bervoets… - Journal of molecular …, 2019 - Elsevier
… and TrmB families of transcription factors, which are the … archaeal and bacterial TFs beyond
regulatory mechanisms by … a common evolutionary origin with bacterial TFs, have undergone …

[HTML][HTML] “Structure”-function relationships in eukaryotic transcription factors: the role of intrinsically disordered regions in gene regulation

JJ Ferrie, JP Karr, R Tjian, X Darzacq - Molecular Cell, 2022 - cell.com
… Precise molecular understanding of many of these mechanisms remains elusive but that
vast subject lies beyond the scope of this review. What should be appreciated here is that there …

When is a transcription factor a NAP?

CJ Dorman, MA Schumacher, MJ Bush… - Current opinion in …, 2020 - Elsevier
… Proteins that regulate transcription often also play an … the distinctions between transcription
factors and nucleoid-… revealed that, beyond classical MerR transcription factors, BldC has …

Diverse and unified mechanisms of transcription initiation in bacteria

J Chen, H Boyaci, EA Campbell - Nature Reviews Microbiology, 2021 - nature.com
regulate initiation, which resulted from recent research that has examined transcriptional
systems beyond the historical model bacteria, … essential housekeeping transcription factors not …

Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
… other regulatory processes. This review provides an extensive overview of the various
mechanisms modulating bacterial … modifications, etc., but this is beyond the scope of this review. …

Transcription factors and evolution: an integral part of gene expression

T Mitsis, A Efthimiadou… - World Academy of …, 2020 - spandidos-publications.com
factors, including epigenetic mechanisms, gene regulatory elements and molecular cofactors.
These molecular mediators, along with transcription factors… TFs goes beyond the structural …

Gene regulation and transcriptomics

DS Samuels, MC Lybecker, XF Yang, Z Ouyang… - Current issues in …, 2021 - mdpi.com
… These regulatory systems respond to enzootic phase-specific signals and are controlled
or finetuned by transcription factors, including BosR and BadR, as well as small RNAs, …

Origin and evolution of eukaryotic transcription factors

A de Mendoza, A Sebé-Pedrós - Current Opinion in Genetics & …, 2019 - Elsevier
Transcription factors (TFs) have a central role in genome regulation directing gene transcription
through binding specific DNA sequences. Eukaryotic genomes encode a large diversity …

Transcription of bacterial chromatin

BA Shen, R Landick - Journal of molecular biology, 2019 - Elsevier
… , helps regulate RNA synthesis by allowing transcription–translation coupling, properly timing
the interaction of transcription factors (… Of particular relevance to interactions with bacterial