Diverse phylogenomic datasets uncover a concordant scenario of laurasiatherian interordinal relationships

X Lv, J Hu, Y Hu, Y Li, D Xu, OA Ryder, DM Irwin… - Molecular Phylogenetics …, 2021 - Elsevier
… We find a resolution of interordinal relationships of Laurasiatheria among all types of markers
used … A resolved laurasiatherian phylogeny is crucial to our understanding of mammalian

Phylogenomics uncovers confidence and conflict in the rapid radiation of Australo-Papuan rodents

EJ Roycroft, A Moussalli, KC Rowe - Systematic biology, 2020 - academic.oup.com
… In contrast to concatenated approaches, multispecies … orthologs across both eutherian
mammals and marsupials, … support for an alternative phylogenetic resolution in four cases across …

Gene-tree misrooting drives conflicts in phylogenomic coalescent analyses of palaeognath birds

MP Simmons, MS Springer, J Gatesy - Molecular phylogenetics and …, 2022 - Elsevier
phylogenomic approaches have struggled to resolve the branching sequence. In these cases,
alternative phylogenomic … can produce well supported but conflicting results (eg, Jarvis et …

Phylogenomics and the genetic architecture of the placental mammal radiation

WJ Murphy, NM Foley, KR Bredemeyer… - … Review of Animal …, 2021 - annualreviews.org
using whole genome data to resolve placental mammal … in, our understanding of placental
mammal phylogeny (6–8). The … extracted directly from multispecies chromosome alignments (…

Contradictory phylogenetic signals in the laurasiatheria anomaly zone

L Doronina, GM Hughes, D Moreno-Santillan… - Genes, 2022 - mdpi.com
phylogenomic methods provide the opportunity to resolve … that included 39 placental mammals
and concluded that … over classical sequence analyses in multispecies coalescent (MSC) …

The multispecies coalescent model outperforms concatenation across diverse phylogenomic data sets

X Jiang, SV Edwards, L Liu - Systematic biology, 2020 - academic.oup.com
… models and computational tools for phylogenetic inference. [Bayes … addressing these
questions, we aim to directly compare competing models, especially as they apply to phylogenomic

Gamete Recognition Gene Divergence Yields a Robust Eutherian Phylogeny across Taxonomic Levels

EK Roberts, EA Wright, AE Worsham, DM Hardy… - Diversity, 2023 - mdpi.com
… to resolve nodes throughout the placental phylogeny by … 2), there were no multiple species
comparisons and therefore no … on a milestone, albeit controversial, phylogenomic study [116]. …

[HTML][HTML] Phylogenomics reveals an almost perfect polytomy among the almost ungulates (Paenungulata)

J Bowman, D Enard, VJ Lynch - bioRxiv, 2023 - ncbi.nlm.nih.gov
… 261 Eutherian mammals to infer phylogenetic relationships … a Proboscidea+Hyracoidea split
in the multispecies coalescent (MSC) … resolved most of the phylogenetic relationships within …

Nuclear phylogenomics, but not mitogenomics, resolves the most successful Late Miocene radiation of African mammals (Rodentia: Muridae: Arvicanthini)

O Mikula, V Nicolas, R Šumbera, A Konečný… - Molecular Phylogenetics …, 2021 - Elsevier
… tree inferred using a multi-species coalescent … resolution of phylogenetic relationships of
notoriously difficult taxa Micaelamys, Aethomys, Thamnomys and Thallomys. Phylogenomic

An emerging consensus in the evolution, phylogeny, and systematics of marsupials and their fossil relatives (Metatheria)

MDB Eldridge, RMD Beck, DA Croft… - Journal of …, 2019 - academic.oup.com
… and major improvements in understanding of their phylogenetic relationships, as well as the
… evidence analyses, which have resolved most previously disputed relationships among and …