GenBank 2024 update
EW Sayers, M Cavanaugh, K Clark… - … Acids Research, 2024 - academic.oup.com
… 2023 as a Year of Open Science, GenBank in 2023 … we have introduced an increasing set
of automations that accelerate … If you use the GenBank database in your published research…
of automations that accelerate … If you use the GenBank database in your published research…
Comparative toxicogenomics database (CTD): update 2021
AP Davis, CJ Grondin, RJ Johnson… - … acids research, 2021 - academic.oup.com
… data-tabs for both the corresponding chemical and phenotype (6,14). We have increased
the utility of chemical–phenotype data by integrating it with CTD’s chemical–disease data-set …
the utility of chemical–phenotype data by integrating it with CTD’s chemical–disease data-set …
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
Y Perez-Riverol, J Bai, C Bandla… - … acids research, 2022 - academic.oup.com
… PRIDE Archive pipelines (2) perform a set of validation and quality checks to … problem,
we will be working in developing a tailored infrastructure for sensitive human proteomics data…
we will be working in developing a tailored infrastructure for sensitive human proteomics data…
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs
EV Kriventseva, D Kuznetsov, F Tegenfeldt… - … acids research, 2019 - academic.oup.com
… comparative evolutionary studies. Optional registered-user sessions allow on-line BUSCO
assessments of gene set completeness and mapping of the uploaded data to OrthoDB to …
assessments of gene set completeness and mapping of the uploaded data to OrthoDB to …
LncRNA2Target v2. 0: a comprehensive database for target genes of lncRNAs in human and mouse
L Cheng, P Wang, R Tian, S Wang, Q Guo… - … acids research, 2019 - academic.oup.com
… collected all lncRNA papers and datasets published from 1 August 2014 to 30 April 2018 by
searching the PubMed literature database … lncRNA–target relationship data through our web …
searching the PubMed literature database … lncRNA–target relationship data through our web …
MODOMICS: a database of RNA modifications and related information. 2023 update
A Cappannini, A Ray, E Purta, S Mukherjee… - … Acids Research, 2024 - academic.oup.com
… The MODOMICS database was updated with recent data … , which commonly caused problems
for computational parsing … We also plan to expand the collection of synthetic modifications…
for computational parsing … We also plan to expand the collection of synthetic modifications…
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
I Rauluseviciute, R Riudavets-Puig… - … Acids Research, 2024 - academic.oup.com
… To address this issue, multiple database solutions have been developed to collect and store
… provide programmatic access to the data stored in the JASPAR database. Specifically, the …
… provide programmatic access to the data stored in the JASPAR database. Specifically, the …
Lnc2Cancer v2. 0: updated database of experimentally supported long non-coding RNAs in human cancers
Y Gao, P Wang, Y Wang, X Ma, H Zhi… - … acids research, 2019 - academic.oup.com
… In Lnc2Cancer 2.0, we have updated the database with more data and several new features…
methylation were collected. For lncRNAs regulated by miRNA and TF, we only collected the …
methylation were collected. For lncRNAs regulated by miRNA and TF, we only collected the …
The European nucleotide archive in 2021
C Cummins, A Ahamed, R Aslam, J Burgin… - … acids research, 2022 - academic.oup.com
… in the event of validation errors or other issues. Additional tools are offered to support … set,
(a) a master record (which is still loaded into the relational database) and (b) a FASTA data …
(a) a master record (which is still loaded into the relational database) and (b) a FASTA data …
PLSDB: advancing a comprehensive database of bacterial plasmids
… In order to address this issue, another filtering step was set in place specially … data of PLSDB,
was to clean it up. In this update, we integrated a part of this process into our data collection …
was to clean it up. In this update, we integrated a part of this process into our data collection …