Pfam: The protein families database in 2021
J Mistry, S Chuguransky, L Williams… - … acids research, 2021 - academic.oup.com
… reference proteomes (due to quality issues) during this time. The … activities that improve
molecular biology databases such as … We have also identified a set of families that have a high …
molecular biology databases such as … We have also identified a set of families that have a high …
The reactome pathway knowledgebase 2024
M Milacic, D Beavers, P Conley, C Gong… - … acids research, 2024 - academic.oup.com
… Finally, we briefly discuss issues involved in making Reactome more fully interoperable with
… The funders had no role in study design, data collection and analysis, decision to publish, or …
… The funders had no role in study design, data collection and analysis, decision to publish, or …
Therapeutic target database 2020: enriched resource for facilitating research and early development of targeted therapeutics
… TF data were collected by comprehensively searching the PubMed database using the …
CAR-T therapies were collected from the February issue of Nature Reviews Drug Discovery (69), …
CAR-T therapies were collected from the February issue of Nature Reviews Drug Discovery (69), …
tRFtarget: a database for transfer RNA-derived fragment targets
… set a seed length threshold of 6 nts and provided five best binding sites per RNA pair. Other
parameters were set at … in tRFtarget with the CLASH data (4), our database covered the most …
parameters were set at … in tRFtarget with the CLASH data (4), our database covered the most …
The EMBL-EBI search and sequence analysis tools APIs in 2019
… analytical tools and nucleotide and protein sequence databases hosted at EMBL-EBI via …
) generates meta-data from their comprehensive ncRNA sequence collection that is indexed …
) generates meta-data from their comprehensive ncRNA sequence collection that is indexed …
[HTML][HTML] PubChem protein, gene, pathway, and taxonomy data collections: bridging biology and chemistry through target-centric views of PubChem data
… To address this issue, unique chemical structures are … 13 and stored in another data collection
called “Compound”. Each … proteins is collected from several NLM/NCBI databases 4 as …
called “Compound”. Each … proteins is collected from several NLM/NCBI databases 4 as …
ECO: the Evidence and Conclusion Ontology, an update for 2022
S Nadendla, R Jackson, J Munro… - … Acids Research, 2022 - academic.oup.com
… Significant effort is invested in designing data models and tools … databases as well as
databases focused on particular topic … Through this process, we established a set of annotation …
databases focused on particular topic … Through this process, we established a set of annotation …
BioSamples database: FAIRer samples metadata to accelerate research data management
… BioSamples database now has a valuable set of features and processes to improve data …
It fails the submission upon error, such as when required fields are not present or when their …
It fails the submission upon error, such as when required fields are not present or when their …
CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs
… of molecular biology, provides new opportunities for research … Therefore, in this work, we
collected data upon different … activity, we further divided our data into three types according to …
collected data upon different … activity, we further divided our data into three types according to …
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
… be assisted by data in the Protein Ensemble Database (PED) … with APICURON, a database
to credit and acknowledge the work … disorder for the structural-molecular biology community. …
to credit and acknowledge the work … disorder for the structural-molecular biology community. …