… , which could perform fast reference-based assemblies on … bioinformatic pipeline called
HAVoC (Helsinki university Analyzer for Variants of Concern). HAVoC can reference assemble …

… Clinical NGS results rely heavily on the bioinformatics pipeline for identifying genetic
variation in complex samples. The choice of bioinformatics algorithms, genome assembly, and …

… ), an automated bioinformatics pipeline optimized for whole-genome assembly of viral
sequences … For the reference-based assembly of SARS-CoV-2, VPipe generated 22 consensus …

… We report the optimization of circular consensus sequencing (CCS) to … De novo genome
assembly using CCS reads alone … outperforming assembly with less-accurate long reads. …

… In this study, we first provide a pipeline to generate a set of the simulated benchmark
transcriptome and corresponding RNAseq data. Using the simulated benchmarking datasets, we …

… on to the consensus. Therefore, there is a need for consensus polishing for assemblies
produced … A base-level correction-free assembly pipeline is developed by directly analyzing and …

… Such data allow laboratories to more accurately test the performance of clinical bioinformatics
pipelines without sequencing additional cases. For example, clinical laboratories may use …

… Each of these frameworks can be used to build bioinformatics pipelines, to execute complex
tasks through the integration of software tools and the control of execution flow, in order to …

… We also discuss a number of transcriptome annotation pipelines that automate the entire
pro… A representative consensus species tree reflecting the phylogeny of the total set of single …

… (ie, high-confidence variant calls and consensus sequences) is of utmost importance to …
user-friendly viral consensus sequence reconstruction and analysis pipeline enabling rapid …