… in DNA methylation methods involves CpG density. The current study was designed to
investigate the CpG density … and correlate this to various DNA methylation analysis data sets. The …

… We analyze longitudinal human DNA methylation trajectories at 345,895 CpGs from 600 …
epigenetic changes at individual CpGs. We show that changes in methylation with age occur at …

… with our previous findings that CpGs indeed protect against DNA methylation. These CpG-poor …
We previously argued that DNA methylation is generally repressive at high CpG density (…

… Integration with ChIP-seq can be performed by examining DNA methylation at well-observed
CpGs across putative enhancers identified by occupancy of histone 3 lysine 4 …

… DNA methylation analysis technologies primarily based on the initial treatments of DNA …
For example, heavily methylated CpG sites were found in the gene bodies of transcriptional …

… Following the great acceptance of the human DNA methylation microarrays, … DNA methylation
microarray (Infinium Mouse Methylation BeadChip) that interrogates 280,754 unique CpG …

… Most studies are limited to the average DNA methylation levels of individual CpGs and
thus neglect heterogeneity within the profiled cell populations. To assess this within-sample …

… Subsequent studies combing MNase-seq and NOMe-seq data demonstrated that increasing
methylated CpG density was correlated with nucleosome occupancy in the human genome […

… Then, since array-probe coverage of genomic CpGs is sparse, our algorithm would evaluate
… genomic CpGs of a specified density between them. We set the density of genomic CpGs …

… We analyzed the RNA-seq, histone modification, and DNA methylation data of the liver,
lung… , and H3K36me3) and possess low DNA methylation levels around TSS, consistent with …